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          Institute: MPI für Dynamik komplexer technischer Systeme     Collection: Systems Biology     Display Documents



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ID: 13815.0, MPI für Dynamik komplexer technischer Systeme / Systems Biology
The systems biology markup language (SBML) : a medium for representation and exchange of biochemical network models
Authors:Hucka, M.; Finney, A.; Sauro, H. M.; Bolouri, H.; Doyle, J. C.; Kitano, H.; Arkin, A. P.; Bornstein, B. J.; Bray, D.; Cornish-Bowden, A.; Cuellar, A. A.; Dronov, S.; Gilles, E. D.; Ginkel, M.; Gor, V.; Goryanin, I. I.; Hedley, W. J.; Hodgman, T. C.; Hofmeyr, J. H.; Hunter, P. J.; Juty, N. S.; Kasberger, J. L.; Kremling, A.; Kummer, U.; Le Novere, N.; Loew, L. M.; Lucio, D.; Mendes, P.; Minch, E.; Mjolsness, E. D.; Nakayama, Y.; Nelson, M. R.; Nielsen, P. F.; Sakurada, T.; Schaff, J. C.; Shapiro, B. E.; Shimizu, T. S.; Spence, H. D.; Stelling, J.; Takahashi, K.; Tomita, M.; Wagner, J.; Wang, J.
Language:English
Date of Publication (YYYY-MM-DD):2003-03-01
Title of Journal:Bioinformatics
Volume:19
Issue / Number:4
Start Page:524
End Page:531
Review Status:Peer-review
Audience:Experts Only
Abstract / Description:Motivation: Molecular biotechnology now makes it possible to build elaborate systems models, but the systems biology community needs information standards if models are to be shared, evaluated and developed cooperatively. Results: We summarize the Systems Biology Markup Language (SBML) Level 1, a free, open, XML-based format for representing biochemical reaction networks. SBML is a software-independent language for describing models common to research in many areas of computational biology, including cell signaling pathways, metabolic pathways, gene regulation, and others.
External Publication Status:published
Document Type:Article
Communicated by:Ernst-Dieter Gilles
Affiliations:MPI für Dynamik komplexer technischer Systeme/Systems Biology
MPI für Dynamik komplexer technischer Systeme/Process Synthesis and Process Dynamics
External Affiliations:CALTECH, Pasadena, CA 91125 USA; ERATO, Kitano Symbiot Syst Project, Tokyo, Japan; Univ Hertfordshire, Hatfield AL10 9AB, Herts, England; Syst Biol Inst, Tokyo, Japan; Univ Calif Berkeley, Berkeley, CA 94720 USA; NASA, JPL, Pasadena, CA USA; Univ Cambridge, Cambridge, England; CNRS, BIP, Marseille, France; Univ Auckland, Auckland 1, New Zealand; GlaxoSmithKline, Stevenage, Herts, England; Univ Stellenbosch, ZA-7600 Stellenbosch, South Africa; EML, Heidelberg, Germany; Univ Connecticut, Ctr Hlth, Farmington, CT USA; Virginia Bioinformat Inst, Blacksburg, VA USA; Keio Univ, Tokyo, Japan; Physiome Sci Inc, Princeton, NJ USA; Sony Comp Sci Labs Inc, Tokyo, Japan; LION Biosci AG, Heidelberg, Germany; Univ Calif Irvine, Sch Informat & Comp Sci, Irvine, CA USA
Identifiers:ISI:000181410700011
ISSN:1367-4803
LOCALID:675 16/04
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