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          Institute: MPI für molekulare Pflanzenphysiologie     Collection: Publikationen Pflanzenphysiologie     Display Documents



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ID: 251370.0, MPI für molekulare Pflanzenphysiologie / Publikationen Pflanzenphysiologie
Extension of the visualization tool MapMan to allow statistical analysis of arrays, display of coresponding genes, and comparison with known responses
Authors:Usadel, B.; Nagel, A.; Thimm, O.; Redestig, H.; Blaesing, O. E.; Palacios-Rojas, N.; Selbig, J.; Hannemann, J.; Piques, M. C.; Steinhauser, D.; Scheible, W. R.; Gibon, Y.; Morcuende, R.; Weicht, D.; Meyer, S.; Stitt, M.
Language:English
Date of Publication (YYYY-MM-DD):2005-07
Title of Journal:Plant Physiology
Journal Abbrev.:Plant Physiol
Volume:138
Issue / Number:3
Start Page:1195
End Page:1204
Review Status:not specified
Audience:Not Specified
Abstract / Description:MapMan is a user-driven tool that displays large genomics datasets onto diagrams of metabolic pathways or other processes. Here, we present new developments, including improvements of the gene assignments and the user interface, a strategy to visualize multilayered datasets, the incorporation of statistics packages, and extensions of the software to incorporate more biological information including visualization of coresponding genes and horizontal searches for similar global responses across large numbers of arrays.
Free Keywords:secondary metabolism
; nitrate response
; DNA microarrays
; arabidopsis
; expression
; database
; mutant
; pathway
; deficient
; phosphate
External Publication Status:published
Document Type:Article
Communicated by:N. N.
Affiliations:MPI für molekulare Pflanzenphysiologie/Metabolische Netzwerke/AG Stitt
External Affiliations:Max Planck Inst Mol Plant Physiol, D-14476 Golm, Germany
Max Planck Inst Mol Plant Physiol, D-14476 Golm, Germany
RZPD German Resource Ctr Genome Res, D-14059 Berlin, Germany
Identifiers:ISI:000230414800003 [ID No:1]
ISI:000230414800003 [ID No:2]
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