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          Institute: MPI für Evolutionsbiologie     Collection: Ecophysiology     Display Documents

ID: 395668.0, MPI für Evolutionsbiologie / Ecophysiology
Comparative analysis of ammonia monooxygenase (amoA) genes in the water column and sediment-water interface of two lakes and the Baltic Sea
Authors:Kim, Ok-Sun; Junier, Pilar; Imhoff, Johannes F.; Witzel, Karl-Paul
Date of Publication (YYYY-MM-DD):2008-11
Title of Journal:FEMS Microbiology Ecology
Journal Abbrev.:FEMS Microbiol Ecol
Issue / Number:2
Start Page:367
End Page:378
Review Status:not specified
Audience:Not Specified
Abstract / Description:The functional gene amoA was used to compare the diversity of ammonia-oxidizing bacteria (AOB) in the water column and sediment-water interface of the two freshwater lakes Plusssee and Schohsee and the Baltic Sea. Nested amplifications were used to increase the sensitivity of amoA detection, and to amplify a 789-bp fragment from which clone libraries were prepared. The larger part of the sequences was only distantly related to any of the cultured AOB and is considered to represent new clusters of AOB within the Nitrosomonas/Nitrosospira group. Almost all sequences from the water column of the Baltic Sea and from 1-m depth of Schohsee were related to different Nitrosospira clusters 0 and 2, respectively. The majority of sequences from Plusssee and Schohsee were associated with sequences from Chesapeake Bay, from a previous study of Plusssee and from rice roots in Nitrosospira-like cluster A, which lacks sequences from Baltic Sea. Two groups of sequences from Baltic Sea sediment were related to clonal sequences from other brackish/marine habitats in the purely environmental Nitrosospira-like cluster B and the Nitrosomonas-like cluster. This confirms previous results from 16S rRNA gene libraries that indicated the existence of hitherto uncultivated AOB in lake and Baltic Sea samples, and showed a differential distribution of AOB along the water column and sediment of these environments.
Free Keywords:amoA; ammonia-oxidizing bacteria; Plusssee; Schohsee; Baltic Sea
External Publication Status:published
Document Type:Article
Affiliations:MPI für Evolutionsbiologie/Abt. Ökophysiologie
External Affiliations:Seoul Natl Univ, Sch Biol Sci, Seoul 151742, South Korea; Seoul Natl Univ, Inst Microbiol, Seoul 151742, South Korea;
Ecole Polytech Fed Lausanne, Lausanne, Switzerland; Univ Kiel, Leibniz Inst Marine Sci, Kiel, Germany
Identifiers:ISSN:0168-6496 [ID-No:1]
DOI:10.1111/j.1574-6941.2008.00565.x [ID-No:2]
LOCALID:2653/S 38934 [Listen-Nummer/S-Nummer]
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