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          Institute: MPI für Dynamik komplexer technischer Systeme     Collection: Systems Biology     Display Documents



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ID: 432889.0, MPI für Dynamik komplexer technischer Systeme / Systems Biology
Required Information About a Western blot Experiment (RIAWE) - A standard for documentation and storage of immunoblot experiments in a relational database
Authors:Bannasch, D.; Bohl, S.; Dietmann, S.; Kreutz, C.; Gilles, E. D.
Language:English
Name of Conference/Meeting:3rd International Biocuration Conference
Place of Conference/Meeting:Berlin, Germany
(Start) Date of Event 
 (YYYY-MM-DD):
2009-04-16
End Date of Conference/Meeting 
 (YYYY-MM-DD):
2009-04-19
Audience:Experts Only
Abstract / Description:Standardization of experimental protocols and procedures is essential for reproducibility and comparability of results from different laboratories. Therefore, both the definition of guidelines for annotation and documentation of the experimental data and their storage in an appropriate database is of great importance. In the german systems biology network HepatoSys (http://www.hepatosys.de/en) several groups generate a lot of data in the context of quantitative immunoblot experiments. To allow for in-depth documentation of such non high throughput data, at first the standardization of the data produced by the various HepatoSys groups was necessary. Subsequently a relational database concept has been developed that also integrates essential parts of the recommendations of the gel electrophoresis part of the minimal information about a proteomics experiment (MIAPE-GE)1). The concept denoted as ‘Required Information About a Western blot Experiment’ (RIAWE) represents the design
of a relational database for storage and querying of immunoblot data, the bio-material used and the standard operating procedures (SOPs) applied. It defines necessary as well as optional information to be provided by an experimenter who performs an immunoblot experiment and also defines the appropriate formats for data storage. Currently, a database realizing the RIAWE concept is being set-up which is expected to be interesting also for groups outside of HepatoSys. Probably, this database will also support an easier data provision to public repositories for immunoblot data as soon as they are available.

1) Gibson, F. et al. Guidelines for reporting the use of gel electrophoresis in proteomics. Nat Biotechnol. 26(8), 863-864 (2008).
Document Type:Poster
Communicated by:Ernst-Dieter Gilles
Affiliations:MPI für Dynamik komplexer technischer Systeme/Systems Biology
External Affiliations:German Cancer Research Center, Im Neuenheimer Feld 280, D-69120
Heidelberg, Germany
Freiburg Center for Data Analysis and Modeling, University of Freiburg,
Eckerstr. 1, D-79104 Freiburg, Germany
CMB, Institute for Bioinformatics and Systems Biology, Helmholtz Zentrum
München, Ingolstädter Landstr. 1, D-85764 Neuherberg, Germany
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