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          Institute: Friedrich-Miescher-Laboratorium     Collection: Publikationen des FML     Display Documents



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ID: 453085.0, Friedrich-Miescher-Laboratorium / Publikationen des FML
Stress-induced changes in the Arabidopsis thaliana transcriptome analyzed using whole-genome tiling arrays
Authors:Zeller, G.; Henz, S. R.; Widmer, C. K.; Sachsenberg, T.; Ratsch, G.; Weigel, D.; Laubinger, S.
Date of Publication (YYYY-MM-DD):2009-06
Title of Journal:Plant Journal
Journal Abbrev.:Plant J
Volume:58
Issue / Number:6
Start Page:1068
End Page:1082
Review Status:not specified
Audience:Experts Only
Abstract / Description:The responses of plants to abiotic stresses are accompanied by massive changes in transcriptome composition. To provide a comprehensive view of stress-induced changes in the Arabidopsis thaliana transcriptome, we have used whole-genome tiling arrays to analyze the effects of salt, osmotic, cold and heat stress as well as application of the hormone abscisic acid (ABA), an important mediator of stress responses. Among annotated genes in the reference strain Columbia we have found many stress-responsive genes, including several transcription factor genes as well as pseudogenes and transposons that have been missed in previous analyses with standard expression arrays. In addition, we report hundreds of newly identified, stress-induced transcribed regions. These often overlap with known, annotated genes. The results are accessible through the Arabidopsis thaliana Tiling Array Express (At-TAX) homepage, which provides convenient tools for displaying expression values of annotated genes, as well as visualization of unannotated transcribed regions along each chromosome.
Free Keywords:Abscisic Acid/pharmacology; Arabidopsis/*genetics/metabolism; Arabidopsis Proteins/genetics/*metabolism; Cold Temperature; Gene Expression Profiling/*methods; Gene Expression Regulation, Plant; *Genome, Plant; Hot Temperature; Oligonucleotide Array Sequence Analysis/methods; RNA, Plant/genetics; Sodium Chloride/pharmacology; Stress, Physiological
External Publication Status:published
Document Type:Article
Communicated by:N. N.
Affiliations:Friedrich-Miescher-Laboratorium/Research Group Gunnar R├Ątsch
External Affiliations:%G eng
Identifiers:ISSN:1365-313X (Electronic) 0960-7412 (Linking) %R TPJ3... [ID No:1]
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=... [ID No:2]
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