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          Institute: MPI für Entwicklungsbiologie     Collection: Abteilung 6 - Molecular Biology (D. Weigel)     Display Documents



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ID: 460673.0, MPI für Entwicklungsbiologie / Abteilung 6 - Molecular Biology (D. Weigel)
Genomewide SNP variation reveals relationships among landraces and modern varieties of rice
Authors:McNally, K. L.; Childs, K. L.; Bohnert, R.; Davidson, R. M.; Zhao, K.; Ulat, V. J.; Zeller, G.; Clark, R. M.; Hoen, D. R.; Bureau, T. E.; Stokowski, R.; Ballinger, D. G.; Frazer, K. A.; Cox, D. R.; Padhukasahasram, B.; Bustamante, C. D.; Weigel, D.; Mackill, D. J.; Bruskiewich, R. M.; Ratsch, G.; Buell, C. R.; Leung, H.; Leach, J. E.
Date of Publication (YYYY-MM-DD):2009-07-28
Title of Journal:Proc Natl Acad Sci U S A
Volume:106
Issue / Number:30
Start Page:12273
End Page:12278
Review Status:not specified
Audience:Not Specified
Abstract / Description:Rice, the primary source of dietary calories for half of humanity, is the first crop plant for which a high-quality reference genome sequence from a single variety was produced. We used resequencing microarrays to interrogate 100 Mb of the unique fraction of the reference genome for 20 diverse varieties and landraces that capture the impressive genotypic and phenotypic diversity of domesticated rice. Here, we report the distribution of 160,000 nonredundant SNPs. Introgression patterns of shared SNPs revealed the breeding history and relationships among the 20 varieties; some introgressed regions are associated with agronomic traits that mark major milestones in rice improvement. These comprehensive SNP data provide a foundation for deep exploration of rice diversity and gene-trait relationships and their use for future rice improvement.
Free Keywords:Chromosome Mapping; Chromosomes, Plant/genetics; Gene Frequency; *Genetic Variation; Genome, Plant/*genetics; Genotype; Molecular Sequence Data; Oryza sativa/classification/*genetics; Phylogeny; *Polymorphism, Single Nucleotide; Quantitative Trait Loci/genetics; Sequence Analysis, DNA; Species Specificity
External Publication Status:published
Document Type:Article
Affiliations:MPI für Entwicklungsbiologie/Abteilung 6 - Molekulare Biologie (Detlef Weigel)
External Affiliations:%G eng
Identifiers:ISSN:1091-6490 (Electronic) 1091-6490 (Linking) %R 0900... [ID No:1]
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=... [ID No:2]
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