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          Institute: MPI für molekulare Genetik     Collection: Sequencing Group     Display Documents



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ID: 535980.0, MPI für molekulare Genetik / Sequencing Group
Genome comparison of the epiphytic bacteria Erwinia billingiae and E. tasmaniensis with the pear pathogen E. pyrifoliae
Authors:Kube, Michael; Migdoll, Alexander M.; Gehring, Isabel; Heitmann, Katja; Mayer, Yvonne; Kuhl, Heiner; Knaust, Florian; Geider, Klaus; Reinhardt, Richard
Language:English
Date of Publication (YYYY-MM-DD):2010-06-22
Title of Journal:BMC Genomics
Volume:11
Start Page:11:393
End Page:11:393
Copyright:© 2010 Kube et al; licensee BioMed Central Ltd
Review Status:not specified
Audience:Experts Only
Abstract / Description:Background
The genus Erwinia includes plant-associated pathogenic and non-pathogenic Enterobacteria. Important pathogens such as Erwinia amylovora, the causative agent of fire blight and E. pyrifoliae causing bacterial shoot blight of pear in Asia belong to this genus. The species E. tasmaniensis and E. billingiae are epiphytic bacteria and may represent antagonists for biocontrol of fire blight. The presence of genes that are putatively involved in virulence in E. amylovora and E. pyrifoliae is of special interest for these species in consequence.

Results
Here we provide the complete genome sequences of the pathogenic E. pyrifoliae strain Ep1/96 with a size of 4.1 Mb and of the non-pathogenic species E. billingiae strain Eb661 with a size of 5.4 Mb, de novo determined by conventional Sanger sequencing and next generation sequencing techniques. Genome comparison reveals large inversions resulting from homologous recombination events. Furthermore, comparison of deduced proteins highlights a relation of E. billingiae strain Eb661 to E. tasmaniensis strain Et1/99 and a distance to E. pyrifoliae for the overall gene content as well as for the presence of encoded proteins representing virulence factors for the pathogenic species. Pathogenicity of E. pyrifoliae is supposed to have evolved by accumulation of potential virulence factors. E. pyrifoliae carries factors for type III secretion and cell invasion. Other genes described as virulence factors for E. amylovora are involved in the production of exopolysaccharides, the utilization of plant metabolites such as sorbitol and sucrose. Some virulence-associated genes of the pathogenic species are present in E. tasmaniensis but mostly absent in E. billingiae.

Conclusion
The data of the genome analyses correspond to the pathogenic lifestyle of E. pyrifoliae and underlines the epiphytic localization of E. tasmaniensis and E. billingiae as a saprophyte.
Comment of the Author/Creator:This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
External Publication Status:published
Document Type:Article
Communicated by:Richard Reinhardt
Affiliations:MPI für molekulare Genetik
External Affiliations:Julius Kuehn Institute, Institute for Plant Protection in Fruit Crops and Viticulture, Schwabenheimer Str. 101, D-69221 Dossenheim, Germany
Heidelberg Institute for Plant Science, Neuenheimer Feld 360, D-69120 Heidelberg, Germany
Identifiers:DOI:10.1186/1471-2164-11-393
ISSN:1471-2164
URL:http://www.biomedcentral.com/content/pdf/1471-2164...
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