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          Institute: MPI für medizinische Forschung     Collection: Abteilung Biomolekulare Mechanismen     Display Documents



ID: 567817.0, MPI für medizinische Forschung / Abteilung Biomolekulare Mechanismen
Solution structure and ligand recognition of the WW domain pair of the yeast splicing factor Prp40
Translation of Title:Solution structure and ligand recognition of the WW domain pair of the yeast splicing factor Prp40
Authors:Wiesner, S.; Stier, Gunter; Sattler, Michael; Macias, Maria J.
Language:English
Date of Publication (YYYY-MM-DD):2002-12-06
Title of Journal:Journal of Molecular Biology
Journal Abbrev.:J. Mol. Biol.
Volume:324
Issue / Number:4
Start Page:807
End Page:822
Review Status:Peer-review
Audience:Experts Only
Intended Educational Use:No
Abstract / Description:The yeast splicing factor pre−mRNA processing protein 40 (Prp40) comprises two N−terminal WW domains, separated by a ten−residue linker, and six consecutive FF domains. In the spliceosome, the Prp40 WW domains participate in cross−intron bridging by interacting with proline−rich regions present in the branch−point binding protein (BBP) and the U5 small nuclear ribonucleoprotein component Prp8. Furthermore, binding of Prp40 to the phosphorylated C−terminal domain (CTD) of the largest subunit of RNA polymerase II is thought to link splicing to transcription. To gain insight into this complex interaction network we have determined the solution structure of the tandem Prp40 WW domains by NMR spectroscopy and performed chemical shift mapping experiments with different proline−rich peptides. The WW domains each adopt the characteristic triple−stranded beta−sheet structure and are connected by a stable alpha−helical linker. On the basis of a detailed analysis of residual dipolar couplings (RDC) and 15N relaxation data we show that the tandem Prp40 WW domains behave in solution as a single folded unit with unique alignment and diffusion tensor, respectively. Using [1H−15N]−RDCs, we were able to accurately define the relative orientation of the WW domains revealing that the binding pockets of each domain face opposite sides of the structure. Furthermore, we found that both Prp40 WW domains interact with PPxY motifs (where x is any residue) present in peptides derived from the splicing factors BBP and Prp8. Moreover, the Prp40 WW domains are shown to bind proline−rich peptides devoid of aromatic residues, which are also recognised by the Abl−SH3 domain and the WW domain of the mammalian Prp40 orthologue formin binding protein 11. In contrast, no interaction was observed between the Prp40 WW domains and the CTD repeats used in this work
Free Keywords:CTD repeat; NMR structure; proline−rich; Prp40; WW domain
Last Change of the Resource (YYYY-MM-DD):--
External Publication Status:published
Document Type:Article
Communicated by:Wulf Kaiser
Affiliations:MPI für medizinische Forschung/Abteilung Biomolekulare Mechanismen
Identifiers:LOCALID:7275
URI:http%3A%2F%2Fwww.sciencedirect.com%2Fscience%3F_ob...
URI:http%3A%2F%2Fdx.doi.org%2F10.1016%2FS0022-2836%280...
URI:http%3A%2F%2Fwww.ncbi.nlm.nih.gov%2Fpubmed%2F12460...
DOI:10.1016%2FS0022-2836%2802%2901145-2
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