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          Institute: MPI für Dynamik und Selbstorganisation     Collection: Biologische Physik und Evolutionäre Dynamik     Display Documents



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ID: 635827.0, MPI für Dynamik und Selbstorganisation / Biologische Physik und Evolutionäre Dynamik
Selective sweeps in growing microbial colonies
Authors:Korolev, Kirill S.; Müller, Melanie J. I.; Karahan, Nilay; Murray, Andrew W.; Hallatschek, Oskar; Nelson, David R.
Language:English
Date of Publication (YYYY-MM-DD):2012-04-04
Title of Journal:Physical Biology
Journal Abbrev.:Phys. Biol.
Volume:9
Issue / Number:2
Sequence Number of Article:026008
Review Status:Peer-review
Audience:Experts Only
Abstract / Description:Evolutionary experiments with microbes are a powerful tool to study mutations and natural selection. These experiments, however, are often limited to the well-mixed environments of a test tube or a chemostat. Since spatial organization can significantly affect evolutionary dynamics, the need is growing for evolutionary experiments in spatially structured environments. The surface of a Petri dish provides such an environment, but a more detailed understanding of microbial growth on Petri dishes is necessary to interpret such experiments. We formulate a simple deterministic reaction–diffusion model, which successfully predicts the spatial patterns created by two competing species during colony expansion. We also derive the shape of these patterns analytically without relying on microscopic details of the model. In particular, we find that the relative fitness of two microbial strains can be estimated from the logarithmic spirals created by selective sweeps. The theory is tested with strains of the budding yeast Saccharomyces cerevisiae for spatial competitions with different initial conditions and for a range of relative fitnesses. The reaction–diffusion model also connects the microscopic parameters like growth rates and diffusion constants with macroscopic spatial patterns and predicts the relationship between fitness in liquid cultures and on Petri dishes, which we confirmed experimentally. Spatial sector patterns therefore provide an alternative fitness assay to the commonly used liquid culture fitness assays.
External Publication Status:published
Document Type:Article
Communicated by:Folkert Müller-Hoissen
Affiliations:MPI für Dynamik und Selbstorganisation/Biologische Physik und Evolutionäre Dynamik
External Affiliations:FAS Center for Systems Biology, Harvard University, Cambridge, MA 02138, USA
Department of Physics, Harvard University, Cambridge, MA 02138, USA
Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138, USA
Department of Physics, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
Identifiers:URL:www.stacks.iop.org/PhysBio/9/026008
DOI:10.1088/1478-3975/9/2/026008
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