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          Institute: MPI für Herz- und Lungenforschung (W. G. Kerckhoff Institut)     Collection: Yearbook 2016     Display Documents



ID: 723965.0, MPI für Herz- und Lungenforschung (W. G. Kerckhoff Institut) / Yearbook 2016
Data mining in newt-omics, the repository for omics data from the newt
Authors:Looso, M.; Braun, T.
Date of Publication (YYYY-MM-DD):2015
Title of Journal:Methods Mol Biol
Volume:1290
Start Page:337
End Page:351
Audience:Not Specified
Abstract / Description:Salamanders are an excellent model organism to study regenerative processes due to their unique ability to regenerate lost appendages or organs. Straightforward bioinformatics tools to analyze and take advantage of the growing number of "omics" studies performed in salamanders were lacking so far. To overcome this limitation, we have generated a comprehensive data repository for the red-spotted newt Notophthalmus viridescens, named newt-omics, merging omics style datasets on the transcriptome and proteome level including expression values and annotations. The resource is freely available via a user-friendly Web-based graphical user interface ( http://newt-omics.mpi-bn.mpg.de) that allows access and queries to the database without prior bioinformatical expertise. The repository is updated regularly, incorporating new published datasets from omics technologies.
External Publication Status:published
Document Type:Article
Communicated by:n.n.
Affiliations:MPI für physiologische und klinische Forschung
Identifiers:ISSN:1940-6029 (Electronic) 1064-3745 (Linking) %R 10.1007/978-1-4939-2495-0_26
URL:http://www.ncbi.nlm.nih.gov/pubmed/25740498
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