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          Institute: MPI für Entwicklungsbiologie     Collection: Abteilung 1 - Protein Evolution (A. Lupas)     Display Documents



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ID: 733217.0, MPI für Entwicklungsbiologie / Abteilung 1 - Protein Evolution (A. Lupas)
FRED 2: an immunoinformatics framework for Python
Authors:Schubert, B.; Walzer, M.; Brachvogel, H. P.; Szolek, A.; Mohr, C.; Kohlbacher, O.
Date of Publication (YYYY-MM-DD):2016-07-01
Title of Journal:Bioinformatics
Volume:32
Issue / Number:13
Start Page:2044
End Page:2046
Review Status:Internal review
Audience:Not Specified
Abstract / Description:UNLABELLED: Immunoinformatics approaches are widely used in a variety of applications from basic immunological to applied biomedical research. Complex data integration is inevitable in immunological research and usually requires comprehensive pipelines including multiple tools and data sources. Non-standard input and output formats of immunoinformatics tools make the development of such applications difficult. Here we present FRED 2, an open-source immunoinformatics framework offering easy and unified access to methods for epitope prediction and other immunoinformatics applications. FRED 2 is implemented in Python and designed to be extendable and flexible to allow rapid prototyping of complex applications. AVAILABILITY AND IMPLEMENTATION: FRED 2 is available at http://fred-2.github.io CONTACT: schubert@informatik.uni-tuebingen.de SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
External Publication Status:published
Document Type:Article
Affiliations:MPI für Entwicklungsbiologie/Abteilung 1 - Proteinevolution (Andrei Lupas)
External Affiliations:Center for Bioinformatics, University of Tubingen, Tubingen 72076, Germany. Center for Bioinformatics, University of Tubingen, Tubingen 72076, Germany Department of Computer Science, Applied Bioinformatics, Tubingen 72076, Germany Quantitative Biology Center, Tubingen 72076, Germany Faculty of Medicine, University of Tubingen, Tubingen 72076, Germany Max Planck Institute for Developmental Biology, Biomolecular Interactions, Tubingen 72076, Germany.
Identifiers:ISSN:1367-4811 (Electronic) 1367-4803 (Linking) %R 10.1... [ID No:1]
URL:https://www.ncbi.nlm.nih.gov/pubmed/27153717 [ID No:2]
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