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| The impact of seasonal and year-round transmission regimes on the evolution of influenza A virus |
| Authors: Adams, Ben; McHardy, Alice | | Date of Publication (YYYY-MM-DD): 2011 | | Title of Journal: Proceedings of the Royal Society / B, Biological Sciences | | Volume: 278 | | Issue / Number: 1716 | | Start Page: 2249 | | End Page: 2256 | | Document Type: Article | | ID: 536330.0 |
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Inferring functional modules of protein families with
probabilistic topic models |
| Authors: Konietzny, Sebastian; Dietz, Laura; McHardy, Alice | | Date of Publication (YYYY-MM-DD): 2011 | | Title of Journal: BMC Bioinformatics | | Volume: 12 | | Start Page: 141:1 | | End Page: 141:14 | | Sequence Number of Article: 141 | | Document Type: Article | | ID: 618929.0 |
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| Inferring functional modules of protein families with probabilistic topic models |
| Authors: Konietzny, Sebastian G.A.; Dietz, Laura; McHardy, Alice | | Date of Publication (YYYY-MM-DD): 2011 | | Title of Journal: BMC Bioinformatics | | Volume: 12 | | Issue / Number: 1 | | Document Type: Article | | ID: 619023.0 |
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| Phylogenetic binning of metagenome sequence samples |
| Authors: McHardy, Alice; Patil, Kaustubh R. | | Title of Book: Handbook of molecular microbial ecology. - Vol. 1, Metagenomics and complementary approaches |
| Start Page: 353 | | End Page: 358 | | Place of Publication: Chichester | | Publisher: Wiley-Blackwell | | Date of Publication (YYYY-MM-DD): 2011 | | Document Type: InBook | | ID: 619022.0 |
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| Adaptation to herbivory by the Tammar wallaby includes bacterial and glycoside hydrolase profiles different from other herbivores |
| Authors: Pope, P. B.; Denman, S. E.; Jones, M.; Tringe, S. G.; Barry, K.; Malfatti, S. A.; McHardy, Alice; Cheng, J.-F.; Hugenholtz, P.; McSweeney, C. S.; Morrison, M. | | Date of Publication (YYYY-MM-DD): 2010 | | Title of Journal: Proceedings of the National Academy of Sciences of the United States of America | | Volume: 107 | | Issue / Number: 33 | | Start Page: 14793 | | End Page: 14798 | | Document Type: Article | | ID: 536328.0 |
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| Allele dynamics plots for the study of evolutionary dynamics in viral populations |
| Authors: Steinbrück, Lars; McHardy, Alice | | Date of Publication (YYYY-MM-DD): 2010 | | Title of Journal: Nucleic Acids Research | | Volume: 39 | | Issue / Number: 1 | | Start Page: 1 | | End Page: 12 | | Sequence Number of Article: e4 | | Document Type: Article | | ID: 536327.0 |
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| Multiple syntrophic interactions in a terephthalate-degrading methanogenic consortium |
| Authors: Lykidis, Athanasios; Chen, Chia-Lung; Tringe, Susannah G.; McHardy, Alice; Copeland, Alex; Kyrpides, Nikos C.; Hugenholtz, Philip; Macarie, Hervé; Olmos, Alejandro; Monroy, Oscar; Liu, Wen-Tso | | Date of Publication (YYYY-MM-DD): 2010 | | Title of Journal: ISME Journal | | Volume: Online | | Start Page: 122 | | End Page: 130 | | Document Type: Article | | ID: 536331.0 |
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| Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins |
| Authors: Turnbaugh, Peter J.; Quince, Christopher; Faith, Jeremiah J.; McHardy, Alice; Yatsunenko, Tanya; Niazi, Faheem; Affourtit, Jason; Egholm, Michael; Henrissat, Bernhard; Knight, Rob; Gordon, Jeffrey I. | | Date of Publication (YYYY-MM-DD): 2010 | | Title of Journal: Proceedings of the National Academy of Sciences of the United States of America | | Volume: 107 | | Issue / Number: 16 | | Start Page: 7503 | | End Page: 7508 | | Document Type: Article | | ID: 536329.0 |
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