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Entries: 1-10  
metilene : fast and sensitive calling of differentially methylated regions from bisulfite sequencing data
Authors: Jühling, F.; Kretzmer, H.; Bernhart, S. H.; Otto, C.; Stadler, P. F.; Hoffmann, S.
Date of Publication (YYYY-MM-DD): 2016
Title of Journal: Genome Research
Volume: 26
Issue / Number: 2
Start Page: 256
End Page: 262
Document Type: Article
ID: 729120.0
DNA methylome analysis in Burkitt and follicular lymphomas identifies differentially methylated regions linked to somatic mutation and transcriptional control
Authors: Kretzmer, H.; Bernhart, S. H.; Wang, W.; Haake, A.; Weniger, M. A.; Bergmann, A. K.; Betts, M. J.; Carrillo-de-Santa-Pau, E.; Doose, G.; Gutwein, J.; Richter, J.; Hovestadt, V.; Huang, B.; Rico, D.; Jühling, F.; Kolarova, J.; Lu, Q.; Otto, C.; Wagener, R.; Arnolds, J.; Burkhardt, B.; Claviez, A.; Drexler, H. G.; Eberth, S.; Eils, R.; Flicek, P.; Haas, S.; Hummel, M.; Karsch, D.; Kerstens, H. H. D.; Klapper, W.; Kreuz, M.; Lawerenz, C.; Lenze, D.; Loeffler, M.; Lopez, C.; MacLeod, R. A. F.; Martens, J. H. A.; Kulis, M.; Ignacio, M.-S. J.; Moeller, P.; Nagel, I.; Picelli, S.; Vater, I.; Rohde, M.; Rosenstiel, P.; Rosolowski, M.; Russell, R. B.; Schilhabel, M.; Schlesner, M.; Stadler, P. F.; Szczepanowski, M.; Trümper, L.; Stunnenberg, H. G.; Küppers, R.; Ammerpohl, O.; Lichter, P.; Siebert, R.; Hoffmann, S.; Radlwimmer, B.
Date of Publication (YYYY-MM-DD): 2015
Title of Journal: Nature Genetics
Volume: 47
Issue / Number: 11
Start Page: 1316
End Page: 1325
Document Type: Article
ID: 718499.0
A first Glimpse at the genome of the Baikalian amphipod Eulimnogammarus verrucosus
Authors: Rivarola-Duarte, L.; Otto, C.; Jühling, F.; Schreiber, S.; Bedulina, D.; Jakob, L.; Gurkov, A.; Axenov-Gribanov, D.; Sahyoun, A. H.; Lucassen, M.; Hackermüller, J.; Hoffmann, S.; Sartoris, F.; Pörtner, H.-O.; Timofeyev, M.; Luckenbach, T.; Stadler, P. F.
Date of Publication (YYYY-MM-DD): 2014
Title of Journal: Journal of Experimental Zoology / B
Volume: 322
Issue / Number: 3
Start Page: 177
End Page: 189
Document Type: Article
ID: 708515.0
A multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection
Authors: Hoffmann, S.; Otto, C.; Doose, G.; Tanzer, A.; Langenberger, D.; Christ, S.; Kunz, M.; Holdt, L. M.; Teupser, D.; Hackermüller, J.; Stadler, P. F.
Date of Publication (YYYY-MM-DD): 2014
Title of Journal: Genome Biology
Volume: 15
Issue / Number: 2
Sequence Number of Article: R34
Document Type: Article
ID: 708503.0
Cell cycle, oncogenic and tumor suppressor pathways regulate numerous long and macro non-protein-coding RNAs
Authors: Hackermüller, J.; Reiche, K.; Otto, C.; Hösler, N.; Blumert, C.; Brocke-Heidrich, K.; Böhlig, L.; Nietsche, A.; Kasack, K.; Ahnert, P.; Krupp, W.; Engeland, K.; Stadler, P. F.; Horn, F.
Date of Publication (YYYY-MM-DD): 2014
Title of Journal: Genome Biology
Volume: 15
Issue / Number: 3
Sequence Number of Article: UNSP R48
Document Type: Article
ID: 708484.0
Lacking alignments? The next-generation sequencing mapper segemehl revisited
Authors: Otto, C.; Stadler, P. F.; Hoffmann, S.
Date of Publication (YYYY-MM-DD): 2014
Title of Journal: Bioinformatics
Volume: 30
Issue / Number: 13
Start Page: 1937
End Page: 1843
Document Type: Article
ID: 708486.0
Evolution of the let-7 microRNA family
Authors: Hertel, J.; Bartschat, S.; Wintsche, A.; Otto, C.; Stadler, P. F.
Date of Publication (YYYY-MM-DD): 2012
Title of Journal: RNA Biology
Volume: 9
Issue / Number: 3
Start Page: 231
End Page: 241
Document Type: Article
ID: 645612.0
Fast and sensitive mapping of bisulfite-treated sequencing data
Authors: Otto, C.; Stadler, P. F.; Hoffmann, S.
Date of Publication (YYYY-MM-DD): 2012
Title of Journal: Bioinformatics
Volume: 28
Issue / Number: 13
Start Page: 1698
End Page: 1704
Document Type: Article
ID: 645560.0
Fast local fragment chaining using sum-of-pair gap costs
Authors: Otto, C.; Hoffmann, S.; Gorodkin, J.; Stadler, P. F.
Date of Publication (YYYY-MM-DD): 2011
Title of Journal: Algorithms for Molecular Biology
Volume: 6
Issue / Number: 1
Sequence Number of Article: 4
Document Type: Article
ID: 587693.0
Synthesis and characterization of carbon nanotube-reinforced copper thin films
Authors: Otto, C.
Name of University: Universität Stuttgart
Place of University: Stuttgart
Date of Approval (YYYY-MM-DD): 2006-11-16
Document Type: PhD-Thesis
ID: 300751.0
Entries: 1-10  
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