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Entries: 1-9  
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A multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection
Authors: Hoffmann, S.; Otto, C.; Doose, G.; Tanzer, A.; Langenberger, D.; Christ, S.; Kunz, M.; Holdt, L. M.; Teupser, D.; Hackermüller, J.; Stadler, P. F.
Date of Publication (YYYY-MM-DD): 2014
Title of Journal: Genome Biology
Volume: 15
Issue / Number: 2
Sequence Number of Article: R34
Document Type: Article
ID: 708503.0
plantDARIO : web based quantitative and qualitative analysis of small RNA-seq data in plants
Authors: Patra, D.; Fasold, M.; Langenberger, D.; Steger, G.; Grosse, I.; Stadler, P. F.
Date of Publication (YYYY-MM-DD): 2014
Title of Journal: Frontiers in Plant Science
Volume: 5
Sequence Number of Article: 708
Document Type: Article
ID: 708584.0
Alu elements in ANRIL non-coding RNA at chromosome 9p21 modulate atherogenic cell functions through trans-regulation of gene networks
Authors: Holdt, L. M.; Hoffmann, S.; Sass, K.; Langenberger, D.; Scholz, M.; Krohn, K.; Finstermeier, K.; Stahringer, A.; Wilfert, W.; Beutner, F.; Gielen, S.; Schuler, G.; Gäbel, G.; Bergert, H.; Bechmann, I.; Stadler, P. F.; Thiery, J.; Teupser, D.
Date of Publication (YYYY-MM-DD): 2013
Title of Journal: PLoS Genetics
Volume: 9
Issue / Number: 7
Sequence Number of Article: e1003588
Document Type: Article
ID: 688064.0
Mapping the RNA-Seq trash bin unusual transcripts in prokaryotic transcriptome sequencing data
Authors: Doose, G.; Alexis, M.; Kirsch, R.; Findeiss, S.; Langenberger, D.; Machne, R.; Morl, M.; Hoffmann, S.; Stadler, P. F.
Date of Publication (YYYY-MM-DD): 2013
Title of Journal: RNA Biology
Volume: 10
Issue / Number: 7
Start Page: 1204
End Page: 1210
Document Type: Article
ID: 688173.0
deepBlockAlign : a tool for aligning RNA-seq profiles of read block patterns
Authors: Langenberger, D.; Pundhir, S.; Ekstroem, C. T.; Stadler, P. F.; Hoffmann, S.; Gorodkin, J.
Date of Publication (YYYY-MM-DD): 2012
Title of Journal: Bioinformatics
Volume: 28
Issue / Number: 1
Start Page: 17
End Page: 24
Document Type: Article
ID: 645619.0
DARIO : a ncRNA detection and analysis tool for next-generation sequencing experiments
Authors: Fasold, M.; Langenberger, D.; Binder, H.; Stadler, P. F.; Hoffmann, S.
Date of Publication (YYYY-MM-DD): 2011
Title of Journal: Nucleic Acids Research
Volume: 39
Start Page: W112
End Page: W117
Document Type: Article
ID: 587710.0
Traces of post-transcriptional RNA modifications in deep sequencing data
Authors: Findeiss, S.; Langenberger, D.; Stadler, P. F.; Hoffmann, S.
Date of Publication (YYYY-MM-DD): 2011
Title of Journal: Biological Chemistry
Volume: 392
Issue / Number: 4
Start Page: 305
End Page: 313
Document Type: Article
ID: 587686.0
Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo) : genome assembly and analysis
Authors: Dalloul, R. A.; Long, J. A.; Zimin, A. V.; Aslam, L.; Beal, K.; Blomberg, L. A.; Bouffard, P.; Burt, D. W.; Crasta, O.; Crooijmans, R. P. M. A.; Cooper, K.; Coulombe, R. A.; De, S.; Delany, M. E.; Dodgson, J. B.; Dong, J. J.; Evans, C.; Frederickson, K. M.; Flicek, P.; Florea, L.; Folkerts, O.; Groenen, M. A. M.; Harkins, T. T.; Herrero, J.; Hoffmann, S.; Megens, H.-J.; Jiang, A.; de, J. P.; Kaiser, P.; Kim, H.; Kim, K.-W.; Kim, S.; Langenberger, D.; Lee, M.-K.; Lee, T.; Mane, S.; Marcais, G.; Marz, M.; McElroy, A. P.; Modise, T.; Nefedov, M.; Notredame, C.; Paton, I. R.; Payne, W. S.; Pertea, G.; Prickett, D.; Puiu, D.; Qioa, D.; Raineri, E.; Ruffier, M.; Salzberg, S. L.; Schatz, M. C.; Scheuring, C.; Schmidt, C. J.; Schroeder, S.; Searle, S. M. J.; Smith, E. J.; Smith, J.; Sonstegard, T. S.; Stadler, P. F.; Tafer, H.; Tu, Z. J.; Van, T. C. P.; Vilella, A. J.; Williams, K. P.; Yorke, J. A.; Zhang, L.; Zhang, H.-B.; Zhang, X.; Zhang, Y.; Reed, K. M.
Date of Publication (YYYY-MM-DD): 2010
Title of Journal: PLoS Biology
Volume: 8
Issue / Number: 9
Sequence Number of Article: e1000475
Document Type: Article
ID: 542287.0
Identification and classification of small RNAs in transcriptome sequence data
Authors: Langenberger, D.; Bermudez-Santana, C.; Stadler, P. F.; Hoffmann, S.
Title of Book: Pacific Symposium on Biocomputing 2010 : Kamuela, Hawaii, USA, 4 - 8 January 2010
Start Page: 80
End Page: 87
Place of Publication: Hackensack, NJ [u. a.]
Publisher: World Scientific
Date of Publication (YYYY-MM-DD): 2010
Document Type: InBook
ID: 542501.0
Entries: 1-9  
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