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Entries: 1-10  
Analysis of quality raw data of second generation sequencers with Quality Assessment Software
Authors: Ramos, Rommel T.J.; Carneiro, Adriana R.; Baumbach, Jan; Azevedo, Vasco; Schneider, Maria P.C.; Silva, Artur
Date of Publication (YYYY-MM-DD): 2011
Title of Journal: BMC Research Notes
Volume: 4
Issue / Number: 1
Start Page: 130,1
End Page: 130,6
Sequence Number of Article: 130
Document Type: Article
ID: 618823.0
A singular value decomposition approach for improved taxonomy classification of biological sequences
Authors: Santos, Anderson R; Santos, Marcos A; Baumbach, Jan; McCulloch, John A; Oliveira, Guilherme C; Silva, Artur; Miyoshi, Anderson; Azevedo, Vasco
Date of Publication (YYYY-MM-DD): 2011
Title of Journal: BMC Genomics
Volume: 12
Issue / Number: Suppl. 4
Start Page: S11,1
End Page: S11,15
Sequence Number of Article: S11
Document Type: Article
ID: 618826.0
clusterMaker: A Multi-algorithm Clustering Plugin for Cytoscape
Authors: Morris, John H.; Apeltsin, Leonard; Newman, Aaron M.; Baumbach, Jan; Wittkop, Tobias; Su, Gang; Bader, Gary D.; Ferrin, Thomas E.
Date of Publication (YYYY-MM-DD): 2011
Title of Journal: BMC Bioinformatics
Volume: 12
Issue / Number: 1
Start Page: 436,1
End Page: 436,14
Sequence Number of Article: 436
Document Type: Article
ID: 618825.0
Comprehensive cluster analysis with Transitivity {Clustering}
Authors: Wittkop, Tobias; Emig, Dorothea; Truss, Anke; Albrecht, Mario; Böcker, Sebastian; Baumbach, Jan
Date of Publication (YYYY-MM-DD): 2011
Title of Journal: Nature Protocols
Volume: 6
Issue / Number: 3
Start Page: 285
End Page: 295
Document Type: Article
ID: 618789.0
Evidence for Reductive Genome Evolution and Lateral Acquisition of Virulence Functions in two Corynebacterium pseudotuberculosis strains
Authors: Ruiz, Jeronimo C.; D'Afonseca, Vivian; Silva, Artur; Ali, Amjad; Pinto, Anne C.; Santos, Anderson R.; Rocha, Aryanne A. M. C.; Lopes, Debora O.; Dorella, Fernanda A.; Pacheco, Luis G. C.; Costa, Marcilia P.; Turk, Meritxell Z.; Seyffert, Nubia; Moraes, Pablo M. R. O.; Soares, Siomar C.; Almeida, Sintia S.; Castro, Thiago L. P.; Abreu, Vinicius A. C.; Trost, Eva; Baumbach, Jan; Tauch, Andreas; Schneider, Maria P. C.; McCulloch, John; Cerdeira, Louise T.; Ramos, Rommel T. J.; Zerlotini, Adhemar; Dominitini, Anderson; Resende, Daniela M.; Coser, Elisangela M.; Oliveira, Luciana M.; Pedrosa, Andre L.; Vieira, Carlos U.; Guimaraes, Claudia T.; Bartholomeu, Daniela C.; Oliveira, Diana M.; Santos, Fabricio R.; Rabelo, Elida Mara; Lobo, Francisco P.; Franco, Gloria R.; Costa, Ana Flavia; Castro, Ieso M.; Dias, Silvia Regina; Ferro, Jesus A.; Ortega, Jose Miguel; Paiva, Luciano V.; Goulart, Luiz R.; Almeida, Juliana Franco; Ferro, Maria Ines; Carneiro, Newton P.; Falcao, Paula R. K.; Grynberg, Priscila; Teixeira, Santuza M. R.; Brommonschenkel, Sergio; Oliveira, Sergio C.; Meyer, Roberto; Moore, Robert J.; Miyoshi, Anderson; Oliveira, Guilherme C.; Azevedo, Vaco
Date of Publication (YYYY-MM-DD): 2011
Title of Journal: PLoS ONE
Volume: 6
Issue / Number: 4
Sequence Number of Article: e18551
Document Type: Article
ID: 618822.0
Extension and robustness of Transitivity {Clustering} for protein-protein interaction network analysis
Authors: Wittkop, Tobias; Rahmann, Sven; Roettger, Roettger; Boecker, Sebastian; Baumbach, Jan
Date of Publication (YYYY-MM-DD): 2011
Title of Journal: Internet Mathematics
Volume: 7
Issue / Number: 4
Start Page: 255
End Page: 273
Document Type: Article
ID: 618827.0
Rapid hybrid de novo assembly of a microbial genome using only short reads: Corynebacterium pseudotuberculosis I19 as a case study
Authors: Cerdeira, Louise Teixeira; Carneir, Aadriana Ribeiro; Ramos, Rommel Thiago Juca; de Almeida, Sintia Silva; Alfonseca, Vivian; Schneider, Maria Paula Cruz; Baumbach, Jan; Tauch, Andreas; McCulloch, John Anthony; Azevedo, Vasco Ariston Carvalho; Silva, Aartur
Date of Publication (YYYY-MM-DD): 2011
Title of Journal: Journal of Microbiological Methods
Volume: 86
Issue / Number: 2
Start Page: 218
End Page: 223
Document Type: Article
ID: 618824.0
RhizoRegNet - A database of rhizobial transcription factors and regulatory networks.
Authors: Krol, Elizaveta; Blom, Jochen; Winnebald, Jörn; Berhörster, Alexander; Barnett, Melanie J.; Goesmann, Alexander; Baumbach, Jan; Becker, Anke
Date of Publication (YYYY-MM-DD): 2011
Title of Journal: Journal of Biotechnology
Volume: 155
Issue / Number: 1
Start Page: 127
End Page: 134
Document Type: Article
ID: 618819.0
AltAnalyze and {DomainGraph}: analyzing and visualizing exon expression data
Authors: Emig, Dorothea; Salomonis, Nathan; Baumbach, Jan; Lengauer, Thomas; Conklin, Bruce R.; Albrecht, Mario
Date of Publication (YYYY-MM-DD): 2010
Title of Journal: Nucleic Acids Research
Volume: 38
Issue / Number: Suppl. 2
Start Page: W755
End Page: W762
Document Type: Article
ID: 536624.0
Efficient Online Transcription Factor Binding Site Adjustment by Integrating Transitive Graph Projection with MoRAine 2.0
Authors: Wittkop, Tobias; Rahmann, Sven; Baumbach, Jan
Place of Publication: Bielefeld, Germany
Publisher: IMBio
Date of Publication (YYYY-MM-DD): 2010
Title of Proceedings: Special Issue: 6th International Symposium on Integrative Bioinformatics
Start Page: 117,1
End Page: 117,11
Sequence Number: 117
Title of Series: Journal of Integrative Bioinformatics
Document Type: Conference-Paper
ID: 536634.0
Entries: 1-10  
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