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Data structures and algorithms for analysis of alternative splicing with RNA-Seq data
Authors: Schulz, Marcel H.
Name of University: Freie Universität
Place of University: Berlin
Date of Approval (YYYY-MM-DD): 2010-08-26
Document Type: PhD-Thesis
ID: 541211.0
 
Full text / Content available
Clinical Diagnostics with Semantic Similarity Searches in Ontologies.
Authors: Köhler, Sebastian; Schulz, Marcel H.; Bauer, Sebastian; Dölken, Sandra; Ott, Claus E.; Mundlos, Christine; Horn, Denise; Mundlos, Stefan; Robinson, Peter N.
Date of Publication (YYYY-MM-DD): 2009-10-01
Title of Journal: The American Journal of Human Genetics
Volume: 85
Issue / Number: 4
Start Page: 457
End Page: 464
Document Type: Article
ID: 447350.0
 
Full text / Content available
Exact Score Distribution Computation for Similarity Searches in Ontologies.
Authors: Schulz, Marcel H.; Köhler, Sebastian; Bauer, Sebastian; Vingron, Martin; Robinson, Peter N.
Title of Book: Algorithms in Bioinformatics
Start Page: 298
End Page: 309
Place of Publication: New York [et al]
Publisher: Springer
Date of Publication (YYYY-MM-DD): 2009-09-19
Document Type: InBook
ID: 447551.0
 
Full text / Content available
Short ultraconserved promoter regions delineate a class of preferentially expressed alternatively spliced transcripts.
Authors: Rödelsperger, Christian; Köhler, Sebastian; Schulz, Marcel H.; Manke, Thomas; Bauer, Sebastian; Robinson, Peter N.
Date of Publication (YYYY-MM-DD): 2009-08-04
Title of Journal: Genomics
Volume: 94
Issue / Number: 5
Start Page: 308
End Page: 316
Document Type: Article
ID: 447521.0
 
Full text / Content available
Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads.
Authors: Ye, Kai; Schulz, Marcel H.; Long, Quan; Apweiler, Rolf; Ning, Zemin
Date of Publication (YYYY-MM-DD): 2009-06-26
Title of Journal: Bioinformatics
Volume: 25
Issue / Number: 21
Start Page: 2865
End Page: 2871
Document Type: Article
ID: 451276.0
 
Full text / Content available
Fast and adaptive variable order Markov chain construction
Authors: Schulz, Marcel H.; Weese, David; Rausch, Tobias; Döring, Andreas; Reinert, Knut; Vingron, Martin
Title of Book: Algorithms in Bioinformatics
Start Page: 306
End Page: 317
Place of Publication: Berlin / Heidelberg
Publisher: Springer
Date of Publication (YYYY-MM-DD): 2008-09-18
Document Type: InBook
ID: 405120.0
A Global View of Gene Activity and Alternative Splicing by Deep Sequencing of the Human Transcriptome
Authors: Sultan, Marc; Schulz, Marcel H.; Hugues, Richard; Magen, Alon; Klingenhoff, Andreas; Scherf, Matthias; Seifert, Martin; Borodina, Tatjana; Soldatov, Aleksey; i Parkhomchuk, Dmitr; Schmidt, Dominic; O'Keeffe, Sean; Haas, Stefan; Vingron, Martin; Lehrach, Hans; Yaspo, Marie-Laure
Date of Publication (YYYY-MM-DD): 2008-08-15
Title of Journal: Science
Volume: 321
Issue / Number: 5891
Start Page: 956
End Page: 960
Document Type: Article
ID: 405122.0
 
Full text / Content available
Efficient string mining under constraints via the deferred frequency index
Authors: Weese, David; Schulz, Marcel H.
Title of Book: Advances in Data Mining. Medical Applications, E-Commerce, Marketing, and Theoretical Aspects
Place of Publication: Berlin/Heidelberg
Publisher: Springer
Date of Publication (YYYY-MM-DD): 2008-07-14
Document Type: InBook
ID: 405639.0
 
Full text / Content available
A short ultraconserved sequence drives transcription from an alternate FBN1 promoter
Authors: Guo, Gao; Bauer, Sebastian; Hecht, Jochen; Schulz, Marcel H.; Busche, Andreas; Robinson, Peter N.
Date of Publication (YYYY-MM-DD): 2008-04-01
Title of Journal: The International Journal of Biochemistry & Cell Biology
Volume: 40
Issue / Number: 4
Start Page: 638
End Page: 650
Document Type: Article
ID: 335978.0
The generalised k-Truncated Suffix Tree for time- and space-efficient searches in multiple DNA or protein sequences
Authors: Schulz, Marcel H.; Bauer, Sebastian; Robinson, Peter N.
Date of Publication (YYYY-MM-DD): 2008-01-01
Title of Journal: International Journal of Bioinformatics Research and Applications : Ijbra
Volume: 4
Issue / Number: 1
Start Page: 81
End Page: 95
Document Type: Article
ID: 404862.0
Entries: 1-10  
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