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Entries: 1-10  
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Alterations of microRNA and microRNA-regulated messenger RNA expression in germinal center B-cell lymphomas determined by integrative sequencing analysis
Authors: Hezaveh, K.; Kloetgen, A.; Bernhart, S. H.; Das, M. K.; Lenze, D.; Richter, J.; Haake, A.; Bergmann, A. K.; Brors, B.; Burkhardt, B.; Claviez, A.; Drexler, H. G.; Eils, R.; Haas, S.; Hoffmann, S.; Karsch, D.; Klapper, W.; Kleinheinz, K.; Korbel, J. O.; Kretzmer, H.; Kreuz, M.; Küppers, R.; Lawerenz, C.; Leich, E.; Loeffler, M.; Mantovani-Loeffler, L.; Lopez, C.; McHardy, A. C.; Moeller, P.; Rohde, M.; Rosenstiel, P.; Rosenwald, A.; Schilhabel, M.; Schlesner, M.; Scholz, I.; Stadler, P. F.; Stilgenbauer, S.; Sungalee, S.; Szczepanowski, M.; Trümper, L.; Weniger, M. A.; Siebert, R.; Borkhardt, A.; Hummel, M.; Hoell, J. I.
Date of Publication (YYYY-MM-DD): 2016
Title of Journal: Haematologica
Volume: 101
Issue / Number: 11
Start Page: 1380
End Page: 1389
Document Type: Article
ID: 729039.0
Changes of bivalent chromatin coincide with increased expression of developmental genes in cancer
Authors: Bernhart, S. H.; Kretzmer, H.; Holdt, L. M.; Jühling, F.; Ammerpohl, O.; Bergmann, A. K.; Northoff, B. H.; Doose, G.; Siebert, R.; Stadler, P. F.; Hoffmann, S.
Date of Publication (YYYY-MM-DD): 2016
Title of Journal: Scientific Reports
Volume: 6
Sequence Number of Article: 37393
Document Type: Article
ID: 729044.0
metilene : fast and sensitive calling of differentially methylated regions from bisulfite sequencing data
Authors: Jühling, F.; Kretzmer, H.; Bernhart, S. H.; Otto, C.; Stadler, P. F.; Hoffmann, S.
Date of Publication (YYYY-MM-DD): 2016
Title of Journal: Genome Research
Volume: 26
Issue / Number: 2
Start Page: 256
End Page: 262
Document Type: Article
ID: 729120.0
Temperature-responsive in vitro RNA structurome of Yersinia pseudotuberculosis
Authors: Righetti, F.; Nuss, A. M.; Twittenhoff, C.; Beele, S.; Urban, K.; Will, S.; Bernhart, S. H.; Stadler, P. F.; Dersch, P.; Narberhaus, F.
Date of Publication (YYYY-MM-DD): 2016
Title of Journal: Proceedings of the National Academy of Sciences of the United States of America
Volume: 113
Issue / Number: 26
Start Page: 7237
End Page: 7242
Document Type: Article
ID: 729075.0
DNA methylome analysis in Burkitt and follicular lymphomas identifies differentially methylated regions linked to somatic mutation and transcriptional control
Authors: Kretzmer, H.; Bernhart, S. H.; Wang, W.; Haake, A.; Weniger, M. A.; Bergmann, A. K.; Betts, M. J.; Carrillo-de-Santa-Pau, E.; Doose, G.; Gutwein, J.; Richter, J.; Hovestadt, V.; Huang, B.; Rico, D.; Jühling, F.; Kolarova, J.; Lu, Q.; Otto, C.; Wagener, R.; Arnolds, J.; Burkhardt, B.; Claviez, A.; Drexler, H. G.; Eberth, S.; Eils, R.; Flicek, P.; Haas, S.; Hummel, M.; Karsch, D.; Kerstens, H. H. D.; Klapper, W.; Kreuz, M.; Lawerenz, C.; Lenze, D.; Loeffler, M.; Lopez, C.; MacLeod, R. A. F.; Martens, J. H. A.; Kulis, M.; Ignacio, M.-S. J.; Moeller, P.; Nagel, I.; Picelli, S.; Vater, I.; Rohde, M.; Rosenstiel, P.; Rosolowski, M.; Russell, R. B.; Schilhabel, M.; Schlesner, M.; Stadler, P. F.; Szczepanowski, M.; Trümper, L.; Stunnenberg, H. G.; Küppers, R.; Ammerpohl, O.; Lichter, P.; Siebert, R.; Hoffmann, S.; Radlwimmer, B.
Date of Publication (YYYY-MM-DD): 2015
Title of Journal: Nature Genetics
Volume: 47
Issue / Number: 11
Start Page: 1316
End Page: 1325
Document Type: Article
ID: 718499.0
2D meets 4G : G-Quadruplexes in RNA secondary structure prediction
Authors: Lorenz, R.; Bernhart, S. H.; Qin, J.; Siederdissen, C. H.; Amman, F.; Tanzer, A.; Amman, F.; Hofacker, I. L.; Stadler, P. F.
Date of Publication (YYYY-MM-DD): 2013
Title of Journal: IEEE ACM Transactions on Computational Biology and Bioinformatics
Volume: 10
Issue / Number: 4
Start Page: 832
End Page: 844
Document Type: Article
ID: 688166.0
RNA folding algorithms with g-quadruplexes
Authors: Lorenz, R.; Bernhart, S. H.; Externbrink, F.; Qin, J.; Siederdissen, C. H.; Amman, F.; Hofacker, I. L.; Stadler, P. F.
Title of Book: Advances in bioinformatics and computational biology : 7th Brazilian Symposium on Bioinformatics, BSB 2012, Campo Grande, Brazil, August 15-17, 2012 ; proceedings
Start Page: 49
End Page: 60
Place of Publication: Berlin [u. a.]
Publisher: Springer
Date of Publication (YYYY-MM-DD): 2012
Document Type: InBook
ID: 645542.0
A folding algorithm for extended RNA secondary structures
Authors: Siederdissen, C. H.; Bernhart, S. H.; Stadler, P. F.; Hofacker, I. L.
Date of Publication (YYYY-MM-DD): 2011
Title of Journal: Bioinformatics
Volume: 27
Issue / Number: 13
Start Page: i129
End Page: i136
Document Type: Article
ID: 587594.0
Animal snoRNAs and scaRNAs with exceptional structures
Authors: Marz, M.; Gruber, A. R.; Siederdissen, C. H.; Amman, F.; Badelt, S.; Bartschat, S.; Bernhart, S. H.; Beyer, W.; Kehr, S.; Lorenz, R.; Tanzer, A.; Yusuf, D.; Tafer, H.; Hofacker, I. L.; Stadler, P. F.
Date of Publication (YYYY-MM-DD): 2011
Title of Journal: RNA Biology
Volume: 8
Issue / Number: 6
Start Page: 938
End Page: 946
Document Type: Article
ID: 587737.0
Deletion analysis of the 3 ' long terminal repeat sequence of plant retrotransposon Tto1 identifies 125 base pairs redundancy as sufficient for first strand transfer
Authors: Tramontano, A.; Donath, A.; Bernhart, S. H.; Reiche, K.; Boehmdorfer, G.; Stadler, P. F.; Bachmair, A.
Date of Publication (YYYY-MM-DD): 2011
Title of Journal: Virology
Volume: 412
Issue / Number: 1
Start Page: 75
End Page: 82
Document Type: Article
ID: 587690.0
Entries: 1-10  
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