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Entries: 1-10  
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Keeping it complicated : mitochondrial genome plasticity across diplonemids
Authors: Valach, M.; Moreira, S.; Hoffmann, S.; Stadler, P. F.; Burger, G.
Date of Publication (YYYY-MM-DD): 2017
Title of Journal: Scientific Reports
Volume: 7
Sequence Number of Article: 14166
Document Type: Article
ID: 741374.0
The RNA workbench : best practices for RNA and high-throughput sequencing bioinformatics in Galaxy
Authors: Grüning, B. A.; Fallmann, J.; Yusuf, D.; Will, S.; Erxleben, A.; Eggenhofer, F.; Houwaart, T.; Batut, B.; Videm, P.; Bagnacani, A.; Wolfien, M.; Lott, S. C.; Hoogstrate, Y.; Hess, W. R.; Wolkenhauer, O.; Hoffmann, S.; Akalin, A.; Ohler, U.; Stadler, P. F.; Backofen, R.
Date of Publication (YYYY-MM-DD): 2017
Title of Journal: Nucleic Acids Research
Volume: 45
Issue / Number: W1
Start Page: 560
End Page: 566
Document Type: Article
ID: 741390.0
Alterations of microRNA and microRNA-regulated messenger RNA expression in germinal center B-cell lymphomas determined by integrative sequencing analysis
Authors: Hezaveh, K.; Kloetgen, A.; Bernhart, S. H.; Das, M. K.; Lenze, D.; Richter, J.; Haake, A.; Bergmann, A. K.; Brors, B.; Burkhardt, B.; Claviez, A.; Drexler, H. G.; Eils, R.; Haas, S.; Hoffmann, S.; Karsch, D.; Klapper, W.; Kleinheinz, K.; Korbel, J. O.; Kretzmer, H.; Kreuz, M.; Küppers, R.; Lawerenz, C.; Leich, E.; Loeffler, M.; Mantovani-Loeffler, L.; Lopez, C.; McHardy, A. C.; Moeller, P.; Rohde, M.; Rosenstiel, P.; Rosenwald, A.; Schilhabel, M.; Schlesner, M.; Scholz, I.; Stadler, P. F.; Stilgenbauer, S.; Sungalee, S.; Szczepanowski, M.; Trümper, L.; Weniger, M. A.; Siebert, R.; Borkhardt, A.; Hummel, M.; Hoell, J. I.
Date of Publication (YYYY-MM-DD): 2016
Title of Journal: Haematologica
Volume: 101
Issue / Number: 11
Start Page: 1380
End Page: 1389
Document Type: Article
ID: 729039.0
Changes of bivalent chromatin coincide with increased expression of developmental genes in cancer
Authors: Bernhart, S. H.; Kretzmer, H.; Holdt, L. M.; Jühling, F.; Ammerpohl, O.; Bergmann, A. K.; Northoff, B. H.; Doose, G.; Siebert, R.; Stadler, P. F.; Hoffmann, S.
Date of Publication (YYYY-MM-DD): 2016
Title of Journal: Scientific Reports
Volume: 6
Sequence Number of Article: 37393
Document Type: Article
ID: 729044.0
metilene : fast and sensitive calling of differentially methylated regions from bisulfite sequencing data
Authors: Jühling, F.; Kretzmer, H.; Bernhart, S. H.; Otto, C.; Stadler, P. F.; Hoffmann, S.
Date of Publication (YYYY-MM-DD): 2016
Title of Journal: Genome Research
Volume: 26
Issue / Number: 2
Start Page: 256
End Page: 262
Document Type: Article
ID: 729120.0
A simple data-adaptive probabilistic variant calling model
Authors: Hoffmann, S.; Stadler, P. F.; Strimmer, K.
Date of Publication (YYYY-MM-DD): 2015
Title of Journal: Algorithms for Molecular Biology
Volume: 10
Sequence Number of Article: 10
Document Type: Article
ID: 718556.0
DNA methylome analysis in Burkitt and follicular lymphomas identifies differentially methylated regions linked to somatic mutation and transcriptional control
Authors: Kretzmer, H.; Bernhart, S. H.; Wang, W.; Haake, A.; Weniger, M. A.; Bergmann, A. K.; Betts, M. J.; Carrillo-de-Santa-Pau, E.; Doose, G.; Gutwein, J.; Richter, J.; Hovestadt, V.; Huang, B.; Rico, D.; Jühling, F.; Kolarova, J.; Lu, Q.; Otto, C.; Wagener, R.; Arnolds, J.; Burkhardt, B.; Claviez, A.; Drexler, H. G.; Eberth, S.; Eils, R.; Flicek, P.; Haas, S.; Hummel, M.; Karsch, D.; Kerstens, H. H. D.; Klapper, W.; Kreuz, M.; Lawerenz, C.; Lenze, D.; Loeffler, M.; Lopez, C.; MacLeod, R. A. F.; Martens, J. H. A.; Kulis, M.; Ignacio, M.-S. J.; Moeller, P.; Nagel, I.; Picelli, S.; Vater, I.; Rohde, M.; Rosenstiel, P.; Rosolowski, M.; Russell, R. B.; Schilhabel, M.; Schlesner, M.; Stadler, P. F.; Szczepanowski, M.; Trümper, L.; Stunnenberg, H. G.; Küppers, R.; Ammerpohl, O.; Lichter, P.; Siebert, R.; Hoffmann, S.; Radlwimmer, B.
Date of Publication (YYYY-MM-DD): 2015
Title of Journal: Nature Genetics
Volume: 47
Issue / Number: 11
Start Page: 1316
End Page: 1325
Document Type: Article
ID: 718499.0
A first Glimpse at the genome of the Baikalian amphipod Eulimnogammarus verrucosus
Authors: Rivarola-Duarte, L.; Otto, C.; Jühling, F.; Schreiber, S.; Bedulina, D.; Jakob, L.; Gurkov, A.; Axenov-Gribanov, D.; Sahyoun, A. H.; Lucassen, M.; Hackermüller, J.; Hoffmann, S.; Sartoris, F.; Pörtner, H.-O.; Timofeyev, M.; Luckenbach, T.; Stadler, P. F.
Date of Publication (YYYY-MM-DD): 2014
Title of Journal: Journal of Experimental Zoology / B
Volume: 322
Issue / Number: 3
Start Page: 177
End Page: 189
Document Type: Article
ID: 708515.0
A multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection
Authors: Hoffmann, S.; Otto, C.; Doose, G.; Tanzer, A.; Langenberger, D.; Christ, S.; Kunz, M.; Holdt, L. M.; Teupser, D.; Hackermüller, J.; Stadler, P. F.
Date of Publication (YYYY-MM-DD): 2014
Title of Journal: Genome Biology
Volume: 15
Issue / Number: 2
Sequence Number of Article: R34
Document Type: Article
ID: 708503.0
Atypical RNAs in the coelacanth transcriptome
Authors: Nitsche, A.; Doose, G.; Tafer, H.; Robinson, M.; Saha, N. R.; Gerdol, M.; Canapa, A.; Hoffmann, S.; Amemiya, C. T.; Stadler, P. F.
Date of Publication (YYYY-MM-DD): 2014
Title of Journal: Journal of Experimental Zoology / B
Volume: 322
Issue / Number: 6
Start Page: 342
End Page: 351
Document Type: Article
ID: 708476.0
Entries: 1-10  
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