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Multiple reference genomes and transcriptomes for Arabidopsis thaliana
Authors: Gan, Xiangchao; Stegle, Oliver; Behr, Jonas; Steffen, Joshua G.; Drewe, Philipp; Hildebrand, Katie L.; Schultheiss, Sebastian J.; Osborne, Edward J.; Sreedharan, Vipin T.; Kahles, André; Bohnert, Regina; Jean, Géraldine; Derwent, Paul; Kersey, Paul; Belfield, Eric J.; Harberd,, Nicholas P.; Kemen, Eric; Toomajian, Christopher; Kover, Paula X.; Clark, Richard M.; Ratsch, Gunnar; Mott, Richard
Date of Publication (YYYY-MM-DD): 2011
Title of Journal: Nature
Volume: 477
Start Page: 419
End Page: 423
Document Type: Article
ID: 581606.0


oqtans: a Galaxy-integrated workflow for quantitative transcriptome analysis from NGS data
Authors: Schultheiss, Sebastian J.; Jean, Géraldine; Behr, Jonas; Drewe, Philipp; Görnitz, Nico; Kahles, André; Mudrakarta, Pramod; Sreedharan, Vipin T.; Zeller, Georg; Rätsch, Gunnar
Date of Publication (YYYY-MM-DD): 2011
Title of Journal: BMC Bioinformatics
Volume: 12
Issue / Number: 11
Start Page: A7
End Page: A7
Document Type: Article
ID: 581611.0


Next generation genome annotation with mGene.ngs
Authors: Behr, Jonas; Bohnert, Regina; Zeller, Georg; Schweikert, Gabriele; Hartmann, Lisa; Rätsch, Gunnar
(Start) Date of Conference/Meeting
(YYYY-MM-DD):
 2010-07-09
Name of Conference/Meeting: Sixth International Society for Computational Biology (ISCB) Student Council Symposium
Place of Conference/Meeting: Boston, MA, USA
Document Type: Talk at Event
ID: 536294.0


The SHOGUN Machine Learning Toolbox
Authors: Sonnenburg, Sören; Rätsch, Gunnar; Henschel, Sebastian; Widmer, Christian; Behr, Jonas; Zien, Alexander; De Bona, Fabio; Binder, Alexander; Gehl, Christian; Franc, Vojtech
Date of Publication (YYYY-MM-DD): 2010
Title of Journal: Journal of Machine Learning Research
Volume: 11
Start Page: 1799
End Page: 1802
Document Type: Article
ID: 537855.0


Transcript quantification with RNA-Seq data
Authors: Bohnert, Regina; Behr, Jonas; Rätsch, Gunnar
Date of Publication (YYYY-MM-DD): 2009
Title of Journal: BMC Bioinformatics
Volume: 10
Issue / Number: S13
Start Page: 5
End Page: 5
Document Type: Article
ID: 455050.0