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Ecological plant epigenetics : evidence from model and non-model species, and the way forward
Authors: Richards, C. L.; Alonso, C.; Becker, C.; Bossdorf, O.; Bucher, E.; Colomé-Tatché, M.; Durka, W.; Engelhardt, J.; Gaspar, B.; Gogol-Döring, A.; Grosse, I.; van, G. T. P.; Heer, K.; Kronholm, I.; Lampei, C.; Latzel, V.; Mirouze, M.; Opgenoorth, L.; Paun, O.; Prohaska, S. J.; Rensing, S. A.; Stadler, P. F.; Trucchi, E.; Ullrich, K.; Verhoeven, K. J. F.
Date of Publication (YYYY-MM-DD): 2017
Title of Journal: Ecology Letters
Volume: 20
Issue / Number: 12
Start Page: 1576
End Page: 1590
Document Type: Article
ID: 741376.0


Expansion of gene clusters, circular orders, and the shortest Hamiltonian path problem
Authors: Prohaska, S. J.; Berkemer, S.; Gärtner, F.; Gatter, T.; Retzlaff, N.; Stadler, P. F.
Date of Publication (YYYY-MM-DD): 2017
Title of Journal: Journal of Mathematical Biology
Document Type: Article
ID: 741356.0


Uncovering missing pieces : duplication and deletion history of arrestins in deuterostomes
Authors: Indrischek, H.; Prohaska, S. J.; Gurevich, V. V.; Gurevich, E. V.; Stadler, P. F.
Date of Publication (YYYY-MM-DD): 2017
Title of Journal: BMC Evolutionary Biology
Volume: 17
Sequence Number of Article: 163
Document Type: Article
ID: 741532.0


Design specifications for cellular regulation
Authors: Krakauer, D. C.; Müller, L.; Prohaska, S. J.; Stadler, P. F.
Date of Publication (YYYY-MM-DD): 2016
Title of Journal: Theory in Biosciences
Volume: 135
Issue / Number: 4
Start Page: 231
End Page: 240
Document Type: Article
ID: 729042.0


The paralog-to-contig assignment problem : high quality gene models from fragmented assemblies
Authors: Indrischek, H.; Wieseke, N.; Stadler, P. F.; Prohaska, S. J.
Date of Publication (YYYY-MM-DD): 2016
Title of Journal: Algorithms for Molecular Biology
Volume: 11
Issue / Number: 1
Start Page: 1
End Page: 14
Document Type: Article
ID: 729115.0


Algebraic dynamic programming over general data structures
Authors: Siederdissen, C. H.; Prohaska, S. J.; Stadler, P. F.
Date of Publication (YYYY-MM-DD): 2015
Title of Journal: BMC Bioinformatics
Volume: 16
Issue / Number: Supplement 19
Sequence Number of Article: S2
Document Type: Article
ID: 718486.0


Processed small RNAs in Archaea and BHB elements
Authors: Berkemer, S.; Siederdissen, C. H.; Amman, F.; Wintsche, A.; Will, S.; Hofacker, I. L.; Prohaska, S. J.; Stadler, P. F.
Date of Publication (YYYY-MM-DD): 2015
Title of Journal: Genomics and Computational Biology
Volume: 1
Issue / Number: 1
Sequence Number of Article: e18
Document Type: Article
ID: 718482.0


The ancestor of modern Holozoa acquired the CCA-adding enzyme from Alphaproteobacteria by horizontal gene transfer
Authors: Betat, H.; Mede, T.; Tretbar, S.; Steiner, L.; Stadler, P. F.; Mörl, M.; Prohaska, S. J.
Date of Publication (YYYY-MM-DD): 2015
Title of Journal: Nucleic Acids Research
Volume: 43
Issue / Number: 14
Start Page: 6739
End Page: 6746
Document Type: Article
ID: 718517.0


The relativity of biological function
Authors: Laubichler, M. D.; Stadler, P. F.; Prohaska, S. J.; Nowick, K.
Date of Publication (YYYY-MM-DD): 2015
Title of Journal: Theory in Biosciences
Volume: 134
Issue / Number: 3
Start Page: 143
End Page: 147
Document Type: Article
ID: 718491.0


A priori assessment of data quality in molecular phylogenetics
Authors: Misof, B.; Meusemann, K.; von, R. B.; Kuck, P.; Prohaska, S. J.; Stadler, P. F.
Date of Publication (YYYY-MM-DD): 2014
Title of Journal: Algorithms for Molecular Biology
Volume: 9
Sequence Number of Article: UNSP 22
Document Type: Article
ID: 708459.0