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Species-wide genetic incompatibility analysis identifies immune genes as hot spots of deleterious epistasis
Authors: Chae, E.; Bomblies, K.; Kim, S. T.; Karelina, D.; Zaidem, M.; Ossowski, S.; Martin-Pizarro, C.; Laitinen, R. A.; Rowan, B. A.; Tenenboim, H.; Lechner, S.; Demar, M.; Habring-Muller, A.; Lanz, C.; Ratsch, G.; Weigel, D.
Date of Publication (YYYY-MM-DD): 2014-12-04
Title of Journal: Cell
Volume: 159
Issue / Number: 6
Start Page: 1341
End Page: 1351
Sequence Number of Article: 25467443
Document Type: Article
ID: 706661.0


A spatial and temporal map of C. elegans gene expression
Authors: Spencer, W. C.; Zeller, G.; Watson, J. D.; Henz, S. R.; Watkins, K. L.; McWhirter, R. D.; Petersen, S.; Sreedharan, V. T.; Widmer, C.; Jo, J.; Reinke, V.; Petrella, L.; Strome, S.; Von Stetina, S. E.; Katz, M.; Shaham, S.; Ratsch, G.; Miller, D. M.
Date of Publication (YYYY-MM-DD): 2011-02
Title of Journal: Genome Research
Volume: 21
Issue / Number: 2
Start Page: 325
End Page: 341
Document Type: Article
ID: 591493.0


Global effects of the small RNA biogenesis machinery on the Arabidopsis thaliana transcriptome
Authors: Laubinger, S.; Zeller, G.; Henz, S. R.; Buechel, S.; Sachsenberg, T.; Wang, J. W.; Ratsch, G.; Weigel, D.
Date of Publication (YYYY-MM-DD): 2010-10-12
Title of Journal: Proceedings of the National Academy of Sciences of the United States of America
Volume: 107
Issue / Number: 41
Start Page: 17466
End Page: 17473
Document Type: Article
ID: 561625.0


mGene: accurate SVM-based gene finding with an application to nematode genomes
Authors: Schweikert, G.; Zien, A.; Zeller, G.; Behr, J.; Dieterich, C.; Ong, C. S.; Philips, P.; De Bona, F.; Hartmann, L.; Bohlen, A.; Kruger, N.; Sonnenburg, S.; Ratsch, G.
Date of Publication (YYYY-MM-DD): 2009-11
Title of Journal: Genome Research
Volume: 19
Issue / Number: 11
Start Page: 2133
End Page: 2143
Document Type: Article
ID: 453081.0


KIRMES: kernel-based identification of regulatory modules in euchromatic sequences
Authors: Schultheiss, S. J.; Busch, W.; Lohmann, J. U.; Kohlbacher, O.; Ratsch, G.
Date of Publication (YYYY-MM-DD): 2009-08-15
Title of Journal: Bioinformatics
Volume: 25
Issue / Number: 16
Start Page: 2126
End Page: 2133
Document Type: Article
ID: 453082.0


KIRMES: kernel-based identification of regulatory modules in euchromatic sequences
Authors: Schultheiss, S. J.; Busch, W.; Lohmann, J. U.; Kohlbacher, O.; Ratsch, G.
Date of Publication (YYYY-MM-DD): 2009-08-15
Title of Journal: Bioinformatics
Volume: 25
Issue / Number: 16
Start Page: 2126
End Page: 2133
Document Type: Article
ID: 460667.0


Genomewide SNP variation reveals relationships among landraces and modern varieties of rice
Authors: McNally, K. L.; Childs, K. L.; Bohnert, R.; Davidson, R. M.; Zhao, K.; Ulat, V. J.; Zeller, G.; Clark, R. M.; Hoen, D. R.; Bureau, T. E.; Stokowski, R.; Ballinger, D. G.; Frazer, K. A.; Cox, D. R.; Padhukasahasram, B.; Bustamante, C. D.; Weigel, D.; Mackill, D. J.; Bruskiewich, R. M.; Ratsch, G.; Buell, C. R.; Leung, H.; Leach, J. E.
Date of Publication (YYYY-MM-DD): 2009-07-28
Title of Journal: Proceedings of the National Academy of Sciences
Volume: 106
Issue / Number: 30
Start Page: 32
End Page: 38
Document Type: Article
ID: 453083.0


Genomewide SNP variation reveals relationships among landraces and modern varieties of rice
Authors: McNally, K. L.; Childs, K. L.; Bohnert, R.; Davidson, R. M.; Zhao, K.; Ulat, V. J.; Zeller, G.; Clark, R. M.; Hoen, D. R.; Bureau, T. E.; Stokowski, R.; Ballinger, D. G.; Frazer, K. A.; Cox, D. R.; Padhukasahasram, B.; Bustamante, C. D.; Weigel, D.; Mackill, D. J.; Bruskiewich, R. M.; Ratsch, G.; Buell, C. R.; Leung, H.; Leach, J. E.
Date of Publication (YYYY-MM-DD): 2009-07-28
Title of Journal: Proc Natl Acad Sci U S A
Volume: 106
Issue / Number: 30
Start Page: 12273
End Page: 12278
Document Type: Article
ID: 460673.0


mGene.web: a web service for accurate computational gene finding
Authors: Schweikert, G.; Behr, J.; Zien, A.; Zeller, G.; Ong, C. S.; Sonnenburg, S.; Ratsch, G.
Date of Publication (YYYY-MM-DD): 2009-07-01
Title of Journal: Nucleic Acids Research
Volume: 37
Issue / Number: Web Server issue
Start Page: W312
End Page: 6
Document Type: Article
ID: 453084.0


Stress-induced changes in the Arabidopsis thaliana transcriptome analyzed using whole-genome tiling arrays
Authors: Zeller, G.; Henz, S. R.; Widmer, C. K.; Sachsenberg, T.; Ratsch, G.; Weigel, D.; Laubinger, S.
Date of Publication (YYYY-MM-DD): 2009-06
Title of Journal: Plant Journal
Volume: 58
Issue / Number: 6
Start Page: 1068
End Page: 1082
Document Type: Article
ID: 453085.0