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LFQProfiler and RNP(xl): Open-Source Tools for Label-Free Quantification and Protein-RNA Cross-Linking Integrated into Proteome Discoverer
Authors: Veit, J.; Sachsenberg, T.; Chernev, A.; Aicheler, F.; Urlaub, H.; Kohlbacher, O.
Date of Publication (YYYY-MM-DD): 2016-09-02
Title of Journal: J Proteome Res
Volume: 15
Issue / Number: 9
Start Page: 3441
End Page: 3448
Document Type: Article
ID: 733216.0


OpenMS: a flexible open-source software platform for mass spectrometry data analysis
Authors: Rost, H. L.; Sachsenberg, T.; Aiche, S.; Bielow, C.; Weisser, H.; Aicheler, F.; Andreotti, S.; Ehrlich, H. C.; Gutenbrunner, P.; Kenar, E.; Liang, X.; Nahnsen, S.; Nilse, L.; Pfeuffer, J.; Rosenberger, G.; Rurik, M.; Schmitt, U.; Veit, J.; Walzer, M.; Wojnar, D.; Wolski, W. E.; Schilling, O.; Choudhary, J. S.; Malmstrom, L.; Aebersold, R.; Reinert, K.; Kohlbacher, O.
Date of Publication (YYYY-MM-DD): 2016-08-30
Title of Journal: Nat Methods
Volume: 13
Issue / Number: 9
Start Page: 741
End Page: 748
Document Type: Article
ID: 733220.0


Analysis of protein-RNA interactions in CRISPR proteins and effector complexes by UV-induced cross-linking and mass spectrometry
Authors: Sharma, K.; Hrle, A.; Kramer, K.; Sachsenberg, T.; Staals, R.; Randau, Lennart; Marchfelder, A.; van der Oost, J.; Kohlbacher, O.; Conti, E.; Urlaub, H.
Date of Publication (YYYY-MM-DD): 2015-11-01
Title of Journal: Methods
Volume: 89
Start Page: 138
End Page: 148
Document Type: Article
ID: 717051.0


Global effects of the small RNA biogenesis machinery on the Arabidopsis thaliana transcriptome
Authors: Laubinger, S.; Zeller, G.; Henz, S. R.; Buechel, S.; Sachsenberg, T.; Wang, J. W.; Ratsch, G.; Weigel, D.
Date of Publication (YYYY-MM-DD): 2010-10-12
Title of Journal: Proceedings of the National Academy of Sciences of the United States of America
Volume: 107
Issue / Number: 41
Start Page: 17466
End Page: 17473
Document Type: Article
ID: 561625.0


Stress-induced changes in the Arabidopsis thaliana transcriptome analyzed using whole-genome tiling arrays
Authors: Zeller, G.; Henz, S. R.; Widmer, C. K.; Sachsenberg, T.; Ratsch, G.; Weigel, D.; Laubinger, S.
Date of Publication (YYYY-MM-DD): 2009-06
Title of Journal: Plant Journal
Volume: 58
Issue / Number: 6
Start Page: 1068
End Page: 1082
Document Type: Article
ID: 453085.0


Stress-induced changes in the Arabidopsis thaliana transcriptome analyzed using whole-genome tiling arrays
Authors: Zeller, G.; Henz, S. R.; Widmer, C. K.; Sachsenberg, T.; Ratsch, G.; Weigel, D.; Laubinger, S.
Date of Publication (YYYY-MM-DD): 2009-06
Title of Journal: Plant J
Volume: 58
Issue / Number: 6
Start Page: 1068
End Page: 1082
Document Type: Article
ID: 460649.0


At-TAX: A Whole Genome Tiling Array Resource for Developmental Expression Analysis and Transcript Identification in Arabidopsis thaliana
Authors: Laubinger, S.; Zeller, G.; Henz, S.R.; Sachsenberg, T.; Widmer, C.K.; Naouar, N.; Vuylsteke, M.; Schölkopf, B.; Rätsch, G.; Weigel, D.
Date of Publication (YYYY-MM-DD): 2008-07
Title of Journal: Genome Biology
Volume: 9
Issue / Number: 7: R112
Start Page: 1
End Page: 16
Document Type: Article
ID: 419918.0


Dual roles of the nuclear cap-binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis thaliana
Authors: Laubinger, S.; Sachsenberg, T.; Zeller, G.; Busch, W.; Lohmann, J. U.; Ratsch, G.; Weigel, D.
Date of Publication (YYYY-MM-DD): 2008-06-24
Volume: 105
Issue / Number: 25
Start Page: 8795
End Page: 8800
Document Type: Article
ID: 402899.0


At-TAX: a whole genome tiling array resource for developmental expression analysis and transcript identification in Arabidopsis thaliana
Authors: Laubinger, S.; Zeller, G.; Henz, S. R.; Sachsenberg, T.; Widmer, C. K.; Naouar, N.; Vuylsteke, M.; Scholkopf, B.; Ratsch, G.; Weigel, D.
Date of Publication (YYYY-MM-DD): 2008
Volume: 9
Issue / Number: 7
Start Page: R112
Document Type: Article
ID: 402900.0