Schulz, M. H.: Data structures and algorithms for analysis of alternative splicing with RNA-Seq data. Doktorarbeit, Freie Universität, Berlin (2010).
Köhler, S., M. H. Schulz, S. Bauer, S. Dölken, C. E. Ott, C. Mundlos, D. Horn, S. Mundlos and P. N. Robinson: Clinical Diagnostics with Semantic Similarity Searches in Ontologies.. In: The American Journal of Human Genetics 85, 4, 457-464 (2009).
doi: 10.1016/j.ajhg.2009.09.003
Schulz, M. H., S. Köhler, S. Bauer, M. Vingron and P. N. Robinson: Exact Score Distribution Computation for Similarity Searches in Ontologies.. In: Algorithms in Bioinformatics. (Eds.) Salzberg, Steven L.; Warnow, Tandy. Lecture Notes in Computer Science 5724. Springer, New York [et al] (2009) 298-309.
doi: 10.1007/978-3-642-04241-6_2
Rödelsperger, C., S. Köhler, M. H. Schulz, T. Manke, S. Bauer and P. N. Robinson: Short ultraconserved promoter regions delineate a class of preferentially expressed alternatively spliced transcripts.. In: Genomics 94, 5, 308-316 (2009).
doi: 10.1016/j.ygeno.2009.07.005
Ye, K., M. H. Schulz, Q. Long, R. Apweiler and Z. Ning: Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads.. In: Bioinformatics 25, 21, 2865-2871 (2009).
doi: 10.1093/bioinformatics/btp394
Schulz, M. H., D. Weese, T. Rausch, A. Döring, K. Reinert and M. Vingron: Fast and adaptive variable order Markov chain construction. In: Algorithms in Bioinformatics. (Eds.) Crandall, Keith A.; Lagergren, Jens. Lecture Notes in Computer Science : Subseries of Lecture Notes in Computer Science 5251. Springer, Berlin / Heidelberg (2008) 306-317.
doi: 10.1007/978-3-540-87361-7
Sultan, M., M. H. Schulz, R. Hugues, A. Magen, A. Klingenhoff, M. Scherf, M. Seifert, T. Borodina, A. Soldatov, D. i Parkhomchuk, D. Schmidt, S. O'Keeffe, S. Haas, M. Vingron, H. Lehrach and M.-L. Yaspo: A Global View of Gene Activity and Alternative Splicing by Deep Sequencing of the Human Transcriptome. In: Science 321, 5891, 956-960 (2008).
doi: 10.1126/science.1160342
Weese, D. and M. H. Schulz: Efficient string mining under constraints via the deferred frequency index. In: Advances in Data Mining. Medical Applications, E-Commerce, Marketing, and Theoretical Aspects. (Eds.) Perner, Petra. Lecture Notes in Computer science 5077. Springer, Berlin/Heidelberg (2008).
doi: 10.1007/978-3-540-70720-2_29
Guo, G., S. Bauer, J. Hecht, M. H. Schulz, A. Busche and P. N. Robinson: A short ultraconserved sequence drives transcription from an alternate FBN1 promoter. In: The International Journal of Biochemistry & Cell Biology 40, 4, 638-650 (2008).
doi: 10.1016/j.biocel.2007.09.004
Schulz, M. H., S. Bauer and P. N. Robinson: The generalised k-Truncated Suffix Tree for time- and space-efficient searches in multiple DNA or protein sequences. In: International Journal of Bioinformatics Research and Applications : Ijbra 4, 1, 81-95 (2008).
doi: 10.1504/IJBRA.2008.017165
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