Alcaro, S., C. Alteri, A. Artese, F. Ceccherini-Silberstein, G. Costa, F. Ortuso, F. Forbici, M.M. Santoro, L. Parrotta, P. Flandre, D. Descamps, V. Calvez, A.-G. Marcelin, C.F. Perno, T. Sing and V. Svicher: Docking Analysis and Resistance Evaluation of Clinically Relevant Mutations Associated with the HIV-1 Nonnucleoside Reverse Transcriptase Inhibitors Nevirapine, Efavirenz and Etravirine. In: ChemMedChem 6, 12, 2203-2213 (2011).
doi: 10.1002/cmdc.201100362
localid: C125673F004B2D7B-814AE4C2010C44A6C12579C90050B2D5-Sing2011
Altmann, A., T. Sing, H. Vermeiren, B. Winters, E. Van Craenenbroeck, K. Van der Borght, S.-Y. Rhee, R.W. Shafer, E. Schülter, R. Kaiser, Y. Peres, A. Sönnerborg, W.J. Fessel, F. Incardona, M. Zazzi, L. Bacheler, H. Van Vlijmen and T. Lengauer: Advantages of Predicted Phenotypes and Statistical Learning Models in Inferring Virological Response to Antiretroviral Therapy from HIV Genotype. In: Antiviral Therapy 14, 2, 273-283 (2009).
localid: C125673F004B2D7B-EC7EFA9EA38CD0D8C125756000644DA1-Altmann2009AVT
Trignetti, M., T. Sing, V. Svicher, M.M. Santoro, R. Forbici, R. D'arrigo, M.C. Bellocchi, M. Santoro, P. Marconi, M. Zaccarelli, M.P. Tortta, R. Bellagamba, P. Narciso, A. Antinori, C.F. Perno, T. Lengauer and F. Ceccherini-Silberstein: Dynamics of NRTI resistance mutations during therapy interruption. In: AIDS Research and Human Retroviruses 25, 1 (2009).
localid: C125673F004B2D7B-82264AE469BC0230C125757E00489F64-LengauerSing2009
Low, A.J., D. Marchant, C.J. Brumme, Z.L. Brumme, W. Dong, T. Sing, R.S. Hogg, J.S.G. Montaner, V. Gill, P.K. Cheung and P.R. Harrigan: CD4-Dependent Characteristics of Coreceptor Use and HIV Type 1 V3 Sequence in a Large Population of Therapy-Naive Individuals. In: AIDS Research and Human Retroviruses 24, 2, 219-228 (2008).
doi: 10.1089/aid.2007.0140
localid: C125756E0038A185-BAC98E9D9729AA81C125757C003B6F16-Low2008
Ceccherini-Silberstein, F., V. Svicher, T. Sing, A. Artese, M. M. Santoro, F. Forbici, A. Bertoli, S. Alcaro, G. Palamara, A. d'A. Monforte, J. Balzarini, A. Antinori, T. Lengauer and C. F. Perno: Characterization and structural analysis of novel mutations in human immunodeficiency virus type 1 reverse transcriptase involved in the regulation of restistance to nonnucleoside inhibitors. In: Journal of Virology 81, 20, 11507-11519 (2007).
doi: 10.1128/JVI.00303-07
localid: C12573CC004A8E26-142B4822A3CC878EC12573CC003737EA-Lengauer2007r
Low, A.J., W. Dong, D. Chan, T. Sing, R. Swanstrom, M. Jensen, S. Pillai, B. Good and P.R. Harrigan: Current V3 genotyping algorithms are inadequate for predicting X4 co-receptor usage in clinical isolates. In: AIDS 21, 14, F19-F26 (2007).
localid: C12573CC004A8E26-53AA5AF477BC1753C12573EF0036C141-LowDong2007
Skrabal, K., A.J. Low, W. Dong, T. Sing, P.K. Cheung, F. Mammano and P.R. Harrigan: Determining human immunodeficiency virus coreceptor use in a clinical setting: Degree of correlation between two phenotypic assays and a bioinformatic model. In: Journal of Clinical Microbiology 45, 2, 279-284 (2007).
doi: 10.1128/JCM.01118-06
localid: C12573CC004A8E26-16F66204BFF3713AC12573F000379CE4-Skrabal2007
Kupfer, B., T. Sing, P. Schüffler, R. Hall, R. Kurz, A. McKeown, K.-E. Schneweis, W. Eberl, J. Oldenburg, H.H. Brackmann, J.K. Rockstroh, U. Spengler, M.P. Däumer, R. Kaiser, T. Lengauer and B. Matz: Fifteen years of Env C2V3C3 evolution in six individuals clonally infected with human immunodeficiency virus type 1. In: Journal of Medical Virology 79, 11, 1629-1639 (2007).
doi: 10.1002/jmv.20976
localid: C12573CC004A8E26-8105876EA25132C5C12573CC00369295-Lengauer2007p
Altmann, A., N. Beerenwinkel, T. Sing, I. Savenkov, M. Däumer, R. Kaiser, S.-Y. Rhee, W.J. Fessel, R.W. Shafer and T. Lengauer: Improved prediction of response to antiretroviral combination therapy using the genetic barrier to drug resistance. In: Antiviral Therapy 12, 2, 169-178 (2007).
localid: C12573CC004A8E26-6640B953DA2CDA2DC1257288005464A4-Altmann2007
Sing, T. and N. Beerenwinkel: Mutagenetic tree Fisher kernel improves prediction of HIV drug resistance from viral genotype. In: Advances in Neural Information Processing Systems 19 : [proceedings of the 20th Conference on Advances in Neural Information Porcessing Systems (NIPS)], (Eds.) Schölkopf, Bernhard; Platt, John C.; Hofmann, Thomas. Advances in Neural Information Processing Systems 19. MIT, Cambridge, MA, USA (2007) 1297-1304.
localid: C12573CC004A8E26-845535906AEB88E6C12572880055BEE4-SingNIPS2006
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