Max Planck Society - eDoc Server

http://edoc.mpg.de



Docking Analysis and Resistance Evaluation of Clinically Relevant Mutations Associated with the HIV-1 Nonnucleoside Reverse Transcriptase Inhibitors Nevirapine, Efavirenz and Etravirine
Authors: Alcaro, Stefano; Alteri, Claudia; Artese, Anna; Ceccherini-Silberstein, Francesca; Costa, Giosuè; Ortuso, Francesco; Forbici, Federica; Santoro, Maria Mercedes; Parrotta, Lucia; Flandre, Philippe; Descamps, Diane; Calvez, Vincent; Marcelin, Anne-Genevieve; Perno, Carlo Federico; Sing, Tobias; Svicher, Valentina
Date of Publication (YYYY-MM-DD): 2011
Title of Journal: ChemMedChem
Volume: 6
Issue / Number: 12
Start Page: 2203
End Page: 2213
Document Type: Article
ID: 618842.0


Advantages of Predicted Phenotypes and Statistical Learning Models in Inferring Virological Response to Antiretroviral Therapy from HIV Genotype
Authors: Altmann, Andre; Sing, Tobias; Vermeiren, Hans; Winters, Bart; Van Craenenbroeck, Elke; Van der Borght, Koen; Rhee, Soo-Yon; Shafer, Robert W; Schülter, Eugen; Kaiser, Rolf; Peres, Yardena; Sönnerborg, Anders; Fessel, W Jeffrey; Incardona, Francesca; Zazzi, Maurizio; Bacheler, Lee; Van Vlijmen, Hermann; Lengauer, Thomas
Date of Publication (YYYY-MM-DD): 2009
Title of Journal: Antiviral Therapy
Volume: 14
Issue / Number: 2
Start Page: 273
End Page: 283
Document Type: Article
ID: 520923.0


Dynamics of NRTI resistance mutations during therapy interruption
Authors: Trignetti, M.; Sing, Tobias; Svicher, V.; Santoro, M.M.; Forbici, R.; D'arrigo, R.; Bellocchi, M.C.; Santoro, M.; Marconi, P.; Zaccarelli, M.; Tortta, M.P.; Bellagamba, R.; Narciso, P.; Antinori, A.; Perno, C.F.; Lengauer, Thomas; Ceccherini-Silberstein, F.
Date of Publication (YYYY-MM-DD): 2009
Title of Journal: AIDS Research and Human Retroviruses
Volume: 25
Issue / Number: 1
Document Type: Article
ID: 520915.0


CD4-Dependent Characteristics of Coreceptor Use and HIV Type 1 V3 Sequence in a Large Population of Therapy-Naive Individuals
Authors: Low, Andrew J.; Marchant, David; Brumme, Chanson J.; Brumme, Zabrina L.; Dong, Winnie; Sing, Tobias; Hogg, Robert S.; Montaner, Julio S. G.; Gill, Vikram; Cheung, Peter K.; Harrigan, P. Richard
Date of Publication (YYYY-MM-DD): 2008
Title of Journal: AIDS Research and Human Retroviruses
Volume: 24
Issue / Number: 2
Start Page: 219
End Page: 228
Document Type: Article
ID: 428151.0


Characterization and structural analysis of novel mutations in human immunodeficiency virus type 1 reverse transcriptase involved in the regulation of restistance to nonnucleoside inhibitors
Authors: Ceccherini-Silberstein, Francesca; Svicher, Valentina; Sing, Tobias; Artese, Anna; Santoro, Maria Mercedes; Forbici, Federica; Bertoli, Ada; Alcaro, Stefano; Palamara, Guido; Monforte, Antonella d'Arminio; Balzarini, Jan; Antinori, Andrea; Lengauer, Thomas; Perno, Carlo Federico
Date of Publication (YYYY-MM-DD): 2007
Title of Journal: Journal of Virology
Volume: 81
Issue / Number: 20
Start Page: 11507
End Page: 11519
Document Type: Article
ID: 356613.0


Current V3 genotyping algorithms are inadequate for predicting X4 co-receptor usage in clinical isolates
Authors: Low, Andrew J.; Dong, Winnie; Chan, Dennison; Sing, Tobias; Swanstrom, Ronald; Jensen, Mark; Pillai, Satish; Good, Benjamin; Harrigan, P. Richard
Date of Publication (YYYY-MM-DD): 2007
Title of Journal: AIDS
Volume: 21
Issue / Number: 14
Start Page: F19
End Page: F26
Document Type: Article
ID: 356567.0


Determining human immunodeficiency virus coreceptor use in a clinical setting: Degree of correlation between two phenotypic assays and a bioinformatic model
Authors: Skrabal, Katharina; Low, Andrew J.; Dong, Winnie; Sing, Tobias; Cheung, Peter K.; Mammano, Fabrizio; Harrigan, P. Richard
Date of Publication (YYYY-MM-DD): 2007
Title of Journal: Journal of Clinical Microbiology
Volume: 45
Issue / Number: 2
Start Page: 279
End Page: 284
Document Type: Article
ID: 356577.0


Fifteen years of Env C2V3C3 evolution in six individuals clonally infected with human immunodeficiency virus type 1
Authors: Kupfer, Bernd; Sing, Tobias; Schüffler, Peter; Hall, Rabea; Kurz, Ralf; McKeown, Astrid; Schneweis, Karl-Eduard; Eberl, Wolfgang; Oldenburg, Johannes; Brackmann, Hans H.; Rockstroh, Jürgen K.; Spengler, Ulrich; Däumer, Martin P.; Kaiser, Rolf; Lengauer, Thomas; Matz, Bertfried
Date of Publication (YYYY-MM-DD): 2007
Title of Journal: Journal of Medical Virology
Volume: 79
Issue / Number: 11
Start Page: 1629
End Page: 1639
Document Type: Article
ID: 356559.0


Improved prediction of response to antiretroviral combination therapy using the genetic barrier to drug resistance
Authors: Altmann, Andre; Beerenwinkel, Niko; Sing, Tobias; Savenkov, Igor; Däumer, Martin; Kaiser, Rolf; Rhee, Soo-Yon; Fessel, W Jeffrey; Shafer, Robert W; Lengauer, Thomas
Date of Publication (YYYY-MM-DD): 2007
Title of Journal: Antiviral Therapy
Volume: 12
Issue / Number: 2
Start Page: 169
End Page: 178
Document Type: Article
ID: 356656.0


Mutagenetic tree Fisher kernel improves prediction of HIV drug resistance from viral genotype
Authors: Sing, Tobias; Beerenwinkel, Niko
Place of Publication: Cambridge, MA, USA
Publisher: MIT
Date of Publication (YYYY-MM-DD): 2007
Title of Proceedings: Advances in Neural Information Processing Systems 19 : [proceedings of the 20th Conference on Advances in Neural Information Porcessing Systems (NIPS)]
Start Page: 1297
End Page: 1304
Title of Series: Advances in Neural Information Processing Systems 19
Document Type: Conference-Paper
ID: 356657.0