Max Planck Society - eDoc Server

Directed evolution of a recombinase that excises the provirus of most HIV-1 primary isolates with high specificity.
Authors: Karpinski, Janet; Hauber, Ilona; Chemnitz, Jan; Schäfer, Carola; Paszkowski-Rogacz, Maciej; Chakraborty, Debojyoti; Beschorner, Niklas; Hofmann-Sieber, Helga; Lange, Ulrike C; Grundhoff, Adam; Hackmann, Karl; Schrock, Evelin; Abi-Ghanem, Josephine; Pisabarro, Maria Teresa; Surendranath, Vineeth; Schambach, Axel; Lindner, Christoph; Lunzen, Jan van; Hauber, Joachim; Buchholz, Frank
Date of Publication (YYYY-MM-DD): 2016
Title of Journal: Nature biotechnology
Volume: 34
Issue / Number: 4
Start Page: 401
End Page: 409
Document Type: Article
ID: 732413.0

Systematic imaging reveals features and changing localization of mRNAs in Drosophila development.
Authors: Jambor, Helena; Surendranath, Vineeth; Kalinka, Alex T.; Mejstrik, Pavel; Saalfeld, Stephan; Tomancak, Pavel
Date of Publication (YYYY-MM-DD): 2015
Title of Journal: eLife
Volume: 4
Sequence Number of Article: e05003
Document Type: Article
ID: 717959.0

morFeus: a web-based program to detect remotely conserved orthologs using symmetrical best hits and orthology network scoring.
Authors: Wagner, Ines; Volkmer, Michael; Sharan, Malvika; Villaveces, Jose M; Oswald, Felix; Surendranath, Vineeth; Habermann, Bianca
Date of Publication (YYYY-MM-DD): 2014
Title of Journal: BMC Bioinformatics
Volume: 15
Sequence Number of Article: 263
Document Type: Article
ID: 705738.0

Designing efficient and specific endoribonuclease-prepared siRNAs.
Authors: Surendranath, Vineeth; Theis, Mirko; Habermann, Bianca; Buchholz, Frank
Date of Publication (YYYY-MM-DD): 2013
Title of Journal: Methods in Molecular Biology (Clifton, N.J.)
Volume: 942
Start Page: 193
End Page: 204
Document Type: Article
ID: 688447.0

Vika/vox, a novel efficient and specific Cre/loxP-like site-specific recombination system.
Authors: Karimova, Madina; Abi-Ghanem, Josephine; Berger, Nicolas; Surendranath, Vineeth; Pisabarro, Maria Teresa; Buchholz, Frank
Date of Publication (YYYY-MM-DD): 2013
Title of Journal: Nucleic Acids Research
Volume: 41
Issue / Number: 2
Sequence Number of Article: e37
Document Type: Article
ID: 688473.0

Combined RNAi and localization for functionally dissecting long non-coding RNAs
Authors: Chakraborty, Debojyoti; Kappei, Dennis; Theis, Mirko; Nitzsche, Anja; Ding, Li; Paszkowski-Rogacz, Maciej; Surendranath, Vineeth; Berger, Nicolas; Schulz, Herbert; Saar, Kathrin; Hubner, Norbert; Buchholz, Frank
Date of Publication (YYYY-MM-DD): 2012
Title of Journal: Nature Methods
Volume: 9
Issue / Number: 4
Start Page: 360
End Page: 362
Document Type: Article
ID: 645195.0

HMMerThread: detecting remote, functional conserved domains in entire genomes by combining relaxed sequence-database searches with fold recognition
Authors: Bradshaw, Charles R.; Surendranath, Vineeth; Henschel, Robert; Mueller, Matthias S; Habermann, Bianca
Date of Publication (YYYY-MM-DD): 2011
Title of Journal: PLoS ONE
Volume: 6
Issue / Number: 3
Sequence Number of Article: e17568
Document Type: Article
ID: 585276.0

SeLOX--a locus of recombination site search tool for the detection and directed evolution of site-specific recombination systems.
Authors: Surendranath, Vineeth; Chusainow, Janet; Hauber, Joachim; Buchholz, Frank; Habermann, Bianca
Date of Publication (YYYY-MM-DD): 2010
Title of Journal: Nucleic Acids Research
Volume: 38
Issue / Number: Suppl. 2
Start Page: 293
End Page: 298
Document Type: Article
ID: 546658.0

Global analysis of the yeast lipidome by quantitative shotgun mass spectrometry
Authors: Ejsing, Christer S.; Sampaio, Julio L.; Surendranath, Vineeth; Duchoslav, Eva; Ekroos, Kim; Klemm, Robin W.; Simons, Kai; Shevchenko, Andrej
Date of Publication (YYYY-MM-DD): 2009
Title of Journal: Proceedings of the National Academy of Sciences of the United States of America
Volume: 106
Issue / Number: 7
Start Page: 2136
End Page: 2141
Document Type: Article
ID: 463144.0

Separating the wheat from the chaff: unbiased filtering of background tandem mass spectra improves protein identification
Authors: Junqueira, Magno; Spirin, Victor; Balbuena, Tiago Santana; Waridel, Patrice; Surendranath, Vineeth; Kryukov, Grigoriy; Adzhubei, Ivan; Thomas, Henrik; Sunyaev, Shamil; Shevchenko, Andrej
Date of Publication (YYYY-MM-DD): 2008
Title of Journal: Journal of Proteome Research
Volume: 7
Issue / Number: 8
Start Page: 3382
End Page: 3395
Document Type: Article
ID: 414358.0