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Automated pipeline for atlas-based annotation of gene expression patterns: Application to postnatal day 7 mouse brain.
Authors: Carson, J.; Ju, T.; Bello, M.; Thaller, C.; Warren, J.; Kakadiaris, I. A.; Chiu, W.; Eichele, G.
Date of Publication (YYYY-MM-DD): 2010-02
Title of Journal: Methods
Volume: 50
Issue / Number: 2
Start Page: 85
End Page: 95
Document Type: Article
ID: 436173.0


Genome-wide atlas of gene expression in the adult mouse brain
Authors: Lein, E. S.; Hawrylycz, M. J.; Ao, N.; Ayres, M.; Bensinger, A.; Bernard, A.; Boe, A. F.; Boguski, M. S.; Brockway, K. S.; Byrnes, E. J.; Chen, L.; Chen, T. M.; Chin, M. C.; Chong, J.; Crook, B. E.; Czaplinska, A.; Dang, C. N.; Datta, S.; Dee, N. R.; Desaki, A. L.; Desta, T.; Diep, E.; Dolbeare, T. A.; Donelan, M. J.; Dong, H. W.; Dougherty, J. G.; Duncan, B. J.; Ebbert, A. J.; Eichele, G.; Estin, L. K.; Faber, C.; Facer, B. A.; Fields, R.; Fischer, S. R.; Fliss, T. P.; Frensley, C.; Gates, S. N.; Glattfelder, K. J.; Halverson, K. R.; Hart, M. R.; Hohmann, J. G.; Howell, M. P.; Jeung, D. P.; Johnson, R. A.; Karr, P. T.; Kawal, R.; Kidney, J. M.; Knapik, R. H.; Kuan, C. L.; Lake, J. H.; Laramee, A. R.; Larsen, K. D.; Lau, C.; Lemon, T. A.; Liang, A. J.; Liu, Y.; Luong, L. T.; Michaels, J.; Morgan, J.; Morgan, R. J.; Mortrud, M. T.; Mosqueda, N. F.; Ng, L. L.; Ng, R.; Orta, G. J.; Overly, C. C.; Pak, T. H.; Parry, S. E.; Pathak, S. D.; Pearson, O. C.; Puchalski, R. B.; Riley, Z. L.; Rockett, H. R.; Rowland, S. A.; Royall, J. J.; Ruiz, M. J.; Sarno, N. R.; Schaffnit, K.; Shapovalova, N. V.; Sivisay, T.; Slaughterbeck, C. R.; Smith, S. C.; Smith, K. A.; Smith, B. I.; Sodt, A. J.; Stewart, N. N.; Stumpf, K. R.; Sunkin, S. M.; Sutram, M.; Tam, A.; Teemer, C. D.; Thaller, C.; Thompson, C. L.; Varnam, L. R.; Visel, A.; Whitlock, R. M.; Wohnoutka, P. E.; Wolkey, C. K.; Wong, V. Y.; Wood, M.; Yaylaoglu, M. B.; Young, R. C.; Youngstrom, B. L.; Yuan, X. F.; Zhang, B.; Zwingman, T. A.; Jones, A. R.
Date of Publication (YYYY-MM-DD): 2007
Title of Journal: Nature
Volume: 445
Start Page: 168
End Page: 176
Document Type: Article
ID: 294036.0


3D volume reconstruction of a mouse brain from histological sections using warp filtering
Authors: Ju, T.; Warren, J.; Carson, J.; Bello, M.; Kakadiaris, I.; Chiu, W.; Thaller, C.; Eichele, G.
Date of Publication (YYYY-MM-DD): 2006
Title of Journal: Journal of Neuroscience Methods
Volume: 156
Start Page: 84
End Page: 100
Document Type: Article
ID: 288035.0


Comprehensive analysis of the expression patterns of the adenylate cyclase gene family in the developing and adult mouse brain.
Authors: Visel, A.; Alvarez-Bolado, G.; Thaller, C.; Eichele, G.
Date of Publication (YYYY-MM-DD): 2006
Title of Journal: Journal of Comparative Neurology
Volume: 496
Issue / Number: 5
Start Page: 684
End Page: 697
Document Type: Article
ID: 288052.0


Comprehensive expression atlas of fibroblast growth factors and their receptors generated by a novel robotic in situ hybridization platform
Authors: Yaylaoglu, M. B.; Titmus, A.; Visel, A.; Alvarez-Bolado, G.; Thaller, C.; Eichele, G.
Date of Publication (YYYY-MM-DD): 2005-10-01
Title of Journal: Developmental Dynamics
Volume: 234
Issue / Number: 2
Start Page: 371
End Page: 386
Sequence Number of Article: 10.1002/dvdy.20441
Document Type: Article
ID: 244715.0


Comprehensive expression atlas of fibroblast growth factors and their receptors generated by a novel robotic in situ hybridization platform
Authors: Yaylaoglu, M. B.; Titmus, A.; Visel, A.; Alvarez-Bolado, G.; Thaller, C.; Eichele, G.
Date of Publication (YYYY-MM-DD): 2005-10-01
Title of Journal: Developmental Dynamics
Volume: 234
Issue / Number: 2
Start Page: 371
End Page: 386
Sequence Number of Article: 10.1002/dvdy.20441
Document Type: Article
ID: 268637.0


A digital atlas to characterize the mouse brain transcriptome
Authors: Carson, J.; Ju, T.; Thaller, C.; Xu, M.; Pallas, S. L.; Crair, M. C.; Warren, J.; Chiu, W.; Eichele, G.
Date of Publication (YYYY-MM-DD): 2005-09-23
Title of Journal: PLoS Computational Biology
Volume: 1
Issue / Number: 4
Sequence Number of Article: 10.1371/journal.pcbi.0010041.eor
Document Type: Article
ID: 269132.0


Building 3D surface networks from 2D curve networks with application to anatomical modeling
Authors: Ju, T.; Carson, J.; Eichele, G.; Thaller, C.; Chiu, W.; Bello, M.; Kakadiaris, I.
Date of Publication (YYYY-MM-DD): 2005
Title of Journal: The Visual Computer
Volume: 21
Start Page: 764
End Page: 773
Document Type: Article
ID: 268823.0


Hybrid segmentation framework for tissue images containing gene expression data
Authors: Bello, M.; Ju, T.; Warren, J.; Carson, J.; Chiu, W.; Thaller, C.; Eichele, G.; Kakadiaris, I.
Title of Book: Medical image computing and computer-assisted intervention -MICCAI 2005; 8. Int. Conf., Palm Springs, Calif., Oct. 26 - 29, 2005
Start Page: 254
End Page: 261
Place of Publication: Berlin
Publisher: Springer
Date of Publication (YYYY-MM-DD): 2005
Document Type: InBook
ID: 269124.0


GenePaint.org: an atlas of gene expression patterns in the mouse embryo
Authors: Visel, A.; Thaller, C.; Eichele, G.
Date of Publication (YYYY-MM-DD): 2004-01-01
Title of Journal: Nucleic Acids Res
Volume: 32
Issue / Number: Database issue
Start Page: D552
End Page: 6
Document Type: Article
ID: 214433.0