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          Document History for Document ID 461005

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Document Version Version Comment Date Status
461005.0 [No comment] 05.03.2010 10:35 Released

ID: 461005.0, MPI für molekulare Genetik / Sequencing Group
New clustering module in BDPC bisulfite sequencing data presentation and compilation web application for DNA methylation analyses.
Authors:Rohde, Christian; Zhang, Yingying; Stamerjohanns, Heinrich; Hecher, Kurt; Reinhardt, Richard; Jeltsch, Albert
Language:English
Research Context:This work was supported by the Nationale Genomforschungsnetz (NGFN2) program of the German Minister of Research and Education (BMBF).
Date of Publication (YYYY-MM-DD):2009-09-01
Title of Journal:BioTechniques
Journal Abbrev.:Biotechniques
Volume:47
Issue / Number:3
Start Page:781
End Page:783
Copyright:2009 BioTechniques
Review Status:not specified
Audience:Experts Only
Abstract / Description:The Bisulfite Sequencing Data Presentation and Compilation (BDPC) web interface for compilation and presentation of data from bisulfite sequencing DNA methylation studies has been improved by adding a new module. This module allows visualization of the whole data set in form of a heatmap of DNA methylation levels and clustering and comparison of tissue methylation patterns. It can also be used for data not processed by BDPC. In addition, several functions of the existing BDPC compilation module have been improved.
Free Keywords:DNA methylation;
epigenetics;
bisulfite analysis;
methylome;
epigenome;
BiQ Analyzer
Comment of the Author/Creator:Address corresponding to Albert Jeltsch, School of Engineering and Science, Jacobs University Bremen, Campus Ring 1, 28725 Bremen, Germany.
Email: a.jeltsch@jacobs-university.de
External Publication Status:published
Document Type:Article
Communicated by:Richard Reinhardt
Affiliations:MPI für molekulare Genetik
External Affiliations:1.School of Engineering and Science, Jacobs University Bremen, Bremen, Germany;
2.Department of Obstetrics and Fetal Medicine, Universitaetsklinikum Hamburg-Eppendorf (UKE), Hamburg, Germany.
Identifiers:URL:http://www.biotechniques.com/BiotechniquesJournal/...
DOI:10.2144/000113196
ISSN:0736-6205
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